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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   547643   methionine synthase 
 gma-r.7   547643   methionine synthase 
 gma-m.5   547643   methionine synthase 
 gma-u.5   100802039   putative cobalamin-independent methionine synthase 
 gma-u.5   100779947   5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 
 gma-u.5   100776541   5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 
 mtr-u.5   11442193   5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 
 mtr-u.5   25495847   5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 
 mtr-u.5   11439549   5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 
 ppo-u.5   112323225   5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 
 ppo-u.5   18098013   5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 
 ppo-u.5   7478605   5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 
 ath-u.5   MS2   methionine synthase 2 
 ath-u.5   ATMS1   Cobalamin-independent synthase family protein 
 ath-u.5   MS3   methionine synthase 3 
 vvi-u.5   100248500   5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 
 vvi-u.5   100242762   5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2 
 sly-u.5   ER69   5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 
 sly-u.5   101250617   5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 
 osa-u.5   4352832   5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1-like 
 osa-u.5   4352833   5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2-like 
 zma-u.5   541714   5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 
 zma-u.5   541942   uncharacterized LOC541942 
 zma-u.5   100286153   uncharacterized LOC100286153 

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Top 50 coexpressed genes to 547643 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 547643 (gma-u.5 coexpression data)

CoexMap"547643"


gmaLOC547643 | Entrez gene ID : 547643      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 3 3 3 2 2 2 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00270 [list] [network] Cysteine and methionine metabolism (212 genes)
gmx00450 [list] [network] Selenocompound metabolism (29 genes)
gmx01230 [list] [network] Biosynthesis of amino acids (403 genes)
GO BP
GO:0009086 [list] [network] methionine biosynthetic process  (33 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (538 genes)  IEA  
GO:0005829 [list] [network] cytosol  (1702 genes)  IEA  
GO MF
GO:0008705 [list] [network] methionine synthase activity  (5 genes)  IEA  
GO:0003871 [list] [network] 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity  (8 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (1182 genes)  IEA  
Protein NP_001235794.1 [sequence] [blastp]
XP_040866133.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  cyto 3,  chlo 2,  cyto_mito 2,  mito_plas 2  (predict for NP_001235794.1)
mito 4,  cyto 3,  chlo 2,  cyto_mito 2,  mito_plas 2  (predict for XP_040866133.1)
Subcellular
localization
TargetP
other 7,  mito 4  (predict for NP_001235794.1)
other 7,  mito 4  (predict for XP_040866133.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
547643

.
gma-r.7
for
547643

.
gma-m.5
for
547643

.
gma-u.5
for
100802039

.
gma-u.5
for
100779947

.
gma-u.5
for
100776541

.
mtr-u.5
for
11442193

.
mtr-u.5
for
25495847

.
mtr-u.5
for
11439549

.
ppo-u.5
for
112323225

.
ppo-u.5
for
18098013

.
ppo-u.5
for
7478605

.
ath-u.5
for
MS2

.
ath-u.5
for
ATMS1

.
ath-u.5
for
MS3

.
vvi-u.5
for
100248500

.
vvi-u.5
for
100242762

.
sly-u.5
for
ER69

.
sly-u.5
for
101250617

.
osa-u.5
for
4352832

.
osa-u.5
for
4352833

.
zma-u.5
for
541714

.
zma-u.5
for
541942

.
zma-u.5
for
100286153

.


Ortholog ID: 1344
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol MS2 ATMS1 LOC100811317 LOC547643 LOC101250617 ER69 LOC4352832 LOC4352833 LOC541714 LOC100286153 LOC103859011 LOC103856476 LOC100242762 LOC100248500 LOC7478605 LOC18098013 LOC11442193 LOC25495847 LOC123087362 LOC123110172 LOC123397666 LOC123446921 LOC107893772 LOC107937302 LOC106447616 LOC106426141 CHLRE_03g180750v5 LOC110431907 LOC110429673 LOC102588440 MS LOC102616845 LOC102606650 LOC104583973 LOC100824461 LOC107811094 LOC107768359
Function* methionine synthase 2 Cobalamin-independent synthase family protein 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase methionine synthase 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1-like 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2-like 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 uncharacterized LOC100286153 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 3, chloroplastic 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1-like 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 uncharacterized protein 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like methionine synthase 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1-like 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00670 One carbon pool by folate 6
ath00940 Phenylpropanoid biosynthesis 6
ath01230 Biosynthesis of amino acids 5
ath00270 Cysteine and methionine metabolism 5
ath01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00670 One carbon pool by folate 7
ath01230 Biosynthesis of amino acids 6
ath00270 Cysteine and methionine metabolism 5
ath01200 Carbon metabolism 4
ath01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00040 Pentose and glucuronate interconversions 5
gma00270 Cysteine and methionine metabolism 5
gma01230 Biosynthesis of amino acids 5
gma00053 Ascorbate and aldarate metabolism 3
gma00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00670 One carbon pool by folate 8
gma01230 Biosynthesis of amino acids 8
gma01200 Carbon metabolism 7
gma01240 Biosynthesis of cofactors 6
gma00270 Cysteine and methionine metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 3
sly00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 7
sly01240 Biosynthesis of cofactors 6
sly00270 Cysteine and methionine metabolism 4
sly01200 Carbon metabolism 4
sly00670 One carbon pool by folate 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 7
osa01230 Biosynthesis of amino acids 6
osa00270 Cysteine and methionine metabolism 4
osa00670 One carbon pool by folate 4
osa00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 6
osa00670 One carbon pool by folate 5
osa00270 Cysteine and methionine metabolism 4
osa00630 Glyoxylate and dicarboxylate metabolism 3
osa01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 9
zma00270 Cysteine and methionine metabolism 5
zma00670 One carbon pool by folate 5
zma01200 Carbon metabolism 4
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 9
zma00270 Cysteine and methionine metabolism 6
zma00670 One carbon pool by folate 6
zma01200 Carbon metabolism 4
zma01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00920 Sulfur metabolism 8
bra00230 Purine metabolism 6
bra01320 Sulfur cycle 6
bra00966 Glucosinolate biosynthesis 3
bra00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00270 Cysteine and methionine metabolism 4
vvi00670 One carbon pool by folate 4
vvi01230 Biosynthesis of amino acids 4
vvi04145 Phagosome 2
vvi00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00670 One carbon pool by folate 5
vvi00270 Cysteine and methionine metabolism 4
vvi01230 Biosynthesis of amino acids 4
vvi01200 Carbon metabolism 3
vvi04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 8
ppo00270 Cysteine and methionine metabolism 7
ppo01200 Carbon metabolism 6
ppo00450 Selenocompound metabolism 4
ppo00030 Pentose phosphate pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 12
ppo00270 Cysteine and methionine metabolism 11
ppo00670 One carbon pool by folate 8
ppo01240 Biosynthesis of cofactors 6
ppo01200 Carbon metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00561 Glycerolipid metabolism 3
mtr00240 Pyrimidine metabolism 2
mtr00760 Nicotinate and nicotinamide metabolism 2
mtr01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 10
mtr00270 Cysteine and methionine metabolism 8
mtr00670 One carbon pool by folate 8
mtr01200 Carbon metabolism 6
mtr01240 Biosynthesis of cofactors 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 8
tae00670 One carbon pool by folate 7
tae00270 Cysteine and methionine metabolism 6
tae01200 Carbon metabolism 6
tae01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00670 One carbon pool by folate 15
tae00270 Cysteine and methionine metabolism 12
tae01230 Biosynthesis of amino acids 12
tae01240 Biosynthesis of cofactors 9
tae00999 Biosynthesis of various plant secondary metabolites 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00270 Cysteine and methionine metabolism 6
hvu01230 Biosynthesis of amino acids 6
hvu00670 One carbon pool by folate 6
hvu01240 Biosynthesis of cofactors 4
hvu01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 4
hvu00940 Phenylpropanoid biosynthesis 3
hvu00010 Glycolysis / Gluconeogenesis 2
hvu00350 Tyrosine metabolism 2
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 9
ghi00450 Selenocompound metabolism 9
ghi01230 Biosynthesis of amino acids 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 9
ghi00450 Selenocompound metabolism 9
ghi01230 Biosynthesis of amino acids 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 8
bna00450 Selenocompound metabolism 8
bna01230 Biosynthesis of amino acids 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 8
bna00450 Selenocompound metabolism 8
bna01230 Biosynthesis of amino acids 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 6
cre00270 Cysteine and methionine metabolism 6
cre00670 One carbon pool by folate 5
cre01200 Carbon metabolism 4
cre01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00670 One carbon pool by folate 7
sbi00270 Cysteine and methionine metabolism 6
sbi01230 Biosynthesis of amino acids 6
sbi01240 Biosynthesis of cofactors 4
sbi00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00670 One carbon pool by folate 6
sbi00270 Cysteine and methionine metabolism 5
sbi01230 Biosynthesis of amino acids 5
sbi01240 Biosynthesis of cofactors 3
sbi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 3
sot01230 Biosynthesis of amino acids 3
sot00670 One carbon pool by folate 3
sot01240 Biosynthesis of cofactors 3
sot04981 Folate transport and metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00670 One carbon pool by folate 9
sot01230 Biosynthesis of amino acids 7
sot01240 Biosynthesis of cofactors 7
sot01200 Carbon metabolism 6
sot00270 Cysteine and methionine metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit03040 Spliceosome 2
cit04144 Endocytosis 2
cit03013 Nucleocytoplasmic transport 2
cit00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 11
cit00270 Cysteine and methionine metabolism 9
cit00670 One carbon pool by folate 7
cit01240 Biosynthesis of cofactors 6
cit00260 Glycine, serine and threonine metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00270 Cysteine and methionine metabolism 5
bdi01230 Biosynthesis of amino acids 5
bdi00670 One carbon pool by folate 4
bdi00520 Amino sugar and nucleotide sugar metabolism 4
bdi01250 Biosynthesis of nucleotide sugars 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 9
bdi00270 Cysteine and methionine metabolism 6
bdi00670 One carbon pool by folate 5
bdi01200 Carbon metabolism 4
bdi00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 15
nta01200 Carbon metabolism 11
nta00670 One carbon pool by folate 9
nta00270 Cysteine and methionine metabolism 8
nta00260 Glycine, serine and threonine metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 9
nta00270 Cysteine and methionine metabolism 8
nta00450 Selenocompound metabolism 6
nta01200 Carbon metabolism 5
nta01240 Biosynthesis of cofactors 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821147 831660 100811317 547643 101250617 101264078 4352832 4352833 541714 100286153 103859011 103856476 100242762 100248500 7478605 18098013 11442193 25495847 123087362 123110172 123397666 123446921 107893772 107937302 106447616 106426141 5728446 110431907 110429673 102588440 102577638 102616845 102606650 104583973 100824461 107811094 107768359
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