ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	AMS1	beta-amyrin synthase
gma-r.7	AMS1	beta-amyrin synthase
gma-m.5	AMS1	beta-amyrin synthase
gma-u.5	100778398	beta-amyrin synthase
gma-u.5	100784662	cycloartenol synthase
gma-u.5	100794151	lupeol synthase
mtr-u.5	25490441	beta-amyrin synthase
mtr-u.5	25500477	mixed-amyrin synthase
mtr-u.5	11434381	beta-amyrin synthase
ppo-u.5	18094524	lupeol synthase
ppo-u.5	18107876	cycloartenol synthase
ath-u.5	LUP1	lupeol synthase 1
ath-u.5	LUP2	lupeol synthase 2
ath-u.5	CAMS1	camelliol C synthase 1
bra-r.6	103832374	amyrin synthase LUP2
bra-r.6	103860345	cycloartenol synthase
vvi-u.5	100254746	beta-amyrin synthase 1
vvi-u.5	100247898	cycloartenol synthase
vvi-u.5	100249623	beta-amyrin synthase 1
ghi-r.1	107942585	beta-amyrin synthase
ghi-r.1	107926281	cycloartenol synthase 2
ghi-r.1	107913787	beta-amyrin synthase
bna-r.1	111213217	cycloartenol synthase-like
bna-r.1	125608837	seco-amyrin synthase-like
bna-r.1	106439781	cycloartenol synthase
cit-r.1	102609708	beta-amyrin synthase 1-like
cit-r.1	102610340	beta-amyrin synthase-like
cit-r.1	102612414	beta-amyrin synthase-like
sly-u.5	TTS2	delta-amyrin synthase
sly-u.5	OSC1	oxidosqualene cyclase 1
sly-u.5	CAS1	cycloartenol synthase
sot-r.1	102602455	cycloartenol Synthase-like
sot-r.1	102600122	beta-amyrin synthase-like
sot-r.1	102594718	cycloartenol synthase 2-like
nta-r.1	107762202	beta-amyrin synthase
nta-r.1	107762593	cycloartenol Synthase-like
nta-r.1	107762781	beta-amyrin synthase
osa-u.5	4328256	cycloartenol synthase-like
osa-u.5	4344966	cycloartenol Synthase
zma-u.5	103626416	achilleol B synthase
zma-u.5	103634847	cycloartenol synthase
zma-u.5	100382426	Cycloartenol synthase
tae-r.2	123132185	cycloartenol synthase
tae-r.2	123132191	achilleol B synthase
hvu-r.1	123410304	achilleol B synthase-like
hvu-r.1	123406116	cycloartenol synthase
sbi-r.1	8067848	achilleol B synthase
sbi-r.1	8069958	achilleol B synthase
bdi-r.1	100843077	cycloartenol synthase
cre-r.1	CHLRE_01g011100v5	uncharacterized protein

Top 50 coexpressed genes to AMS1 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AMS1 (gma-u.5 coexpression data)

CoexMap"547702"

[Cytoscape]

Annotation

functional annotation

KEGG

gmx00909 [list] [network] Sesquiterpenoid and triterpenoid biosynthesis (27 genes)

gmx00999 [list] [network] Biosynthesis of various plant secondary metabolites (93 genes)

GO BP

GO:0016104 [list] [network] triterpenoid biosynthetic process

(10 genes)

IEA

GO CC

GO:0005811 [list] [network] lipid droplet

(31 genes)

IEA

GO MF

GO:0042300 [list] [network] beta-amyrin synthase activity

(6 genes)

IEA

Protein

NP_001236591.2 [sequence] [blastp]
XP_025984855.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 8, nucl 1	(predict for NP_001236591.2)
plas 7, nucl 2	(predict for XP_025984855.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001236591.2)
other 8	(predict for XP_025984855.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for AMS1	gma-r.7 for AMS1	gma-m.5 for AMS1	gma-u.5 for 100778398	gma-u.5 for 100784662	gma-u.5 for 100794151	mtr-u.5 for 25490441	mtr-u.5 for 25500477	mtr-u.5 for 11434381	ppo-u.5 for 18094524	ppo-u.5 for 18107876	ath-u.5 for LUP1	ath-u.5 for LUP2	ath-u.5 for CAMS1	bra-r.6 for 103832374	bra-r.6 for 103860345	vvi-u.5 for 100254746	vvi-u.5 for 100247898	vvi-u.5 for 100249623	ghi-r.1 for 107942585	ghi-r.1 for 107926281	ghi-r.1 for 107913787	bna-r.1 for 111213217	bna-r.1 for 125608837	bna-r.1 for 106439781	cit-r.1 for 102609708	cit-r.1 for 102610340	cit-r.1 for 102612414	sly-u.5 for TTS2	sly-u.5 for OSC1	sly-u.5 for CAS1	sot-r.1 for 102602455	sot-r.1 for 102600122	sot-r.1 for 102594718	nta-r.1 for 107762202	nta-r.1 for 107762593	nta-r.1 for 107762781	osa-u.5 for 4328256	osa-u.5 for 4344966	zma-u.5 for 103626416	zma-u.5 for 103634847	zma-u.5 for 100382426	tae-r.2 for 123132185	tae-r.2 for 123132191	hvu-r.1 for 123410304	hvu-r.1 for 123406116	sbi-r.1 for 8067848	sbi-r.1 for 8069958	bdi-r.1 for 100843077	cre-r.1 for CHLRE_01g011100v5

Ortholog

Ortholog ID: 225

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LUP5

LAS1

CAS1

OSC1

CAS1

LAS

Function^*

cycloartenol synthase

lupeol synthase

beta-amyrin synthase

mixed-amyrin synthase

beta-amyrin synthase

cycloartenol synthase

Terpenoid cyclases family protein

lanosterol synthase 1

cycloartenol synthase 1

amyrin synthase LUP2

cycloartenol synthase

beta-amyrin synthase 1

beta-amyrin synthase

cycloartenol synthase 2

lupeol synthase

cycloartenol synthase

beta-amyrin synthase 1

beta-amyrin synthase 1-like

cycloartenol synthase 2

cycloartenol synthase-like

oxidosqualene cyclase 1

cycloartenol synthase

lanosterol synthase-like

cycloartenol Synthase-like

beta-amyrin synthase

cycloartenol Synthase-like

cycloartenol Synthase

cycloartenol synthase-like

achilleol B synthase-like

uncharacterized LOC100193317

cycloartenol synthase

achilleol B synthase-like

achilleol B synthase

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00909	Sesquiterpenoid and triterpenoid biosynthesis	4
gma00999	Biosynthesis of various plant secondary metabolites	3
gma02010	ABC transporters	2
gma04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00909	Sesquiterpenoid and triterpenoid biosynthesis	5
mtr00999	Biosynthesis of various plant secondary metabolites	5
mtr00280	Valine, leucine and isoleucine degradation	2
mtr00650	Butanoate metabolism	2
mtr00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00909	Sesquiterpenoid and triterpenoid biosynthesis	8
mtr00999	Biosynthesis of various plant secondary metabolites	5
mtr00100	Steroid biosynthesis	3
mtr00280	Valine, leucine and isoleucine degradation	2
mtr00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	2
ppo04626	Plant-pathogen interaction	2
ppo00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2
ppo00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00620	Pyruvate metabolism	7
ath01200	Carbon metabolism	7
ath00010	Glycolysis / Gluconeogenesis	5
ath00020	Citrate cycle (TCA cycle)	4
ath00785	Lipoic acid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00909	Sesquiterpenoid and triterpenoid biosynthesis	4
vvi00999	Biosynthesis of various plant secondary metabolites	4
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00909	Sesquiterpenoid and triterpenoid biosynthesis	4
vvi00999	Biosynthesis of various plant secondary metabolites	4
vvi02010	ABC transporters	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00999	Biosynthesis of various plant secondary metabolites	4
vvi00280	Valine, leucine and isoleucine degradation	2
vvi00900	Terpenoid backbone biosynthesis	2
vvi00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00100	Steroid biosynthesis	6
ghi00061	Fatty acid biosynthesis	2
ghi00780	Biotin metabolism	2
ghi01212	Fatty acid metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04081	Hormone signaling	4
ghi00062	Fatty acid elongation	2
ghi04626	Plant-pathogen interaction	2
ghi00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04081	Hormone signaling	4
ghi00062	Fatty acid elongation	2
ghi04626	Plant-pathogen interaction	2
ghi00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00100	Steroid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	6
bna04145	Phagosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04626	Plant-pathogen interaction	2
cit00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	8
sly00280	Valine, leucine and isoleucine degradation	2
sly00620	Pyruvate metabolism	2
sly00650	Butanoate metabolism	2
sly00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	6
sly04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00061	Fatty acid biosynthesis	3
sot00620	Pyruvate metabolism	3
sot01200	Carbon metabolism	3
sot01212	Fatty acid metabolism	3
sot00640	Propanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00909	Sesquiterpenoid and triterpenoid biosynthesis	4
sot00999	Biosynthesis of various plant secondary metabolites	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00909	Sesquiterpenoid and triterpenoid biosynthesis	4
nta00999	Biosynthesis of various plant secondary metabolites	4
nta02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta02010	ABC transporters	2
nta04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00100	Steroid biosynthesis	6
nta00190	Oxidative phosphorylation	5
nta04145	Phagosome	5
nta01230	Biosynthesis of amino acids	3
nta00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma02010	ABC transporters	2
zma04981	Folate transport and metabolism	2
zma00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00100	Steroid biosynthesis	4
zma00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00250	Alanine, aspartate and glutamate metabolism	3
tae00330	Arginine and proline metabolism	3
tae00620	Pyruvate metabolism	3
tae00710	Carbon fixation by Calvin cycle	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00270	Cysteine and methionine metabolism	2
hvu01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00073	Cutin, suberine and wax biosynthesis	3
sbi04146	Peroxisome	3
sbi03013	Nucleocytoplasmic transport	2
sbi00062	Fatty acid elongation	2
sbi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00909	Sesquiterpenoid and triterpenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00909	Sesquiterpenoid and triterpenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00100	Steroid biosynthesis	5

Expression

Expression pattern

Entrez Gene ID^*

100784662

100794151

100810544

25490441

11428611

7465577

7485522

843014

823649

815275

103832374

103828738

100254746

100249623

100259856

107926281

107901998

107962932

106439781

106353429

102609708

102616606

102615312

101265842

100147715

101261713

102581012

102592553

107762202

107806219

107826198

4328256

4350734

100193317

103654926

123132185

123406116

123411732

8067848

8072983

8073228

100827654

5715025

The preparation time of this page was 1.9 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	3	2	3	2	3	3	3	3	3	3	3	2	3	2	2	2	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AMS1 (gma-u.5 coexpression data)

Top 50 enrichment test to AMS1 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**