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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   TFIIB1   transcription factor TFIIB 
 gma-r.7   TFIIB1   transcription factor TFIIB 
 gma-m.5   TFIIB1   transcription factor TFIIB 
 gma-u.5   100790355   transcription initiation factor IIB 
 gma-u.5   100800061   transcription initiation factor IIB-2 
 gma-u.5   100784014   transcription initiation factor IIB 
 mtr-u.5   25488839   transcription initiation factor IIB-2 
 mtr-u.5   25488804   transcription initiation factor IIB-2 
 ppo-u.5   7484022   transcription initiation factor IIB-2 
 ppo-u.5   7473606   transcription initiation factor IIB-2 
 ath-u.5   TFIIB   transcription factor IIB 
 ath-u.5   AT3G10330   Cyclin-like family protein 
 vvi-u.5   100248187   transcription initiation factor IIB 
 vvi-u.5   100267614   transcription initiation factor IIB-2 
 vvi-u.5   100266630   transcription initiation factor IIB-2 
 sly-u.5   101246877   transcription initiation factor IIB-2 
 sly-u.5   101266576   transcription initiation factor IIB-2 
 sly-u.5   101252540   transcription initiation factor IIB-2 
 osa-u.5   4347689   transcription initiation factor IIB-like 
 zma-u.5   103645624   transcription initiation factor IIB 

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Top 50 coexpressed genes to TFIIB1 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TFIIB1 (gma-u.5 coexpression data)

CoexMap"548070"


gmaTFIIB1 | Entrez gene ID : 548070    
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 2 2 2 3 3 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03022 [list] [network] Basal transcription factors (90 genes)
GO BP
GO:0070897 [list] [network] transcription preinitiation complex assembly  (37 genes)  IEA  
GO:0006352 [list] [network] DNA-templated transcription initiation  (123 genes)  IEA  
GO CC
GO:0097550 [list] [network] transcription preinitiation complex  (15 genes)  IEA  
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0017025 [list] [network] TBP-class protein binding  (21 genes)  IEA  
Protein NP_001238343.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  cyto_nucl 3,  chlo 3,  cyto 2,  extr 1,  pero 1  (predict for NP_001238343.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001238343.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
TFIIB1

.
gma-r.7
for
TFIIB1

.
gma-m.5
for
TFIIB1

.
gma-u.5
for
100790355

.
gma-u.5
for
100800061

.
gma-u.5
for
100784014

.
mtr-u.5
for
25488839

.
mtr-u.5
for
25488804

.
ppo-u.5
for
7484022

.
ppo-u.5
for
7473606

.
ath-u.5
for
TFIIB

.
ath-u.5
for
AT3G10330

.
vvi-u.5
for
100248187

.
vvi-u.5
for
100267614

.
vvi-u.5
for
100266630

.
sly-u.5
for
101246877

.
sly-u.5
for
101266576

.
sly-u.5
for
101252540

.
osa-u.5
for
4347689

.
zma-u.5
for
103645624

.


Ortholog ID: 1305
Species ath ath gma gma sly sly osa zma bra bra vvi vvi ppo mtr mtr tae hvu ghi ghi bna bna cre sbi sot sot cit cit bdi nta nta
Symbol TFIIB AT3G10330 LOC100800061 LOC100790355 LOC101266576 LOC101246877 LOC4347689 LOC103645624 LOC103857988 LOC103859340 LOC100267614 LOC100248187 LOC7484022 LOC11411517 LOC25488804 LOC123104566 LOC123400110 LOC107889411 LOC107918152 LOC125585421 LOC106439245 CHLRE_06g310450v5 LOC8063057 LOC102593687 LOC102583751 LOC102629446 LOC127901004 LOC100828741 LOC107777806 LOC107777807
Function* transcription factor IIB Cyclin-like family protein transcription initiation factor IIB-2 transcription initiation factor IIB transcription initiation factor IIB-2 transcription initiation factor IIB-2 transcription initiation factor IIB-like transcription initiation factor IIB transcription initiation factor IIB-1 transcription initiation factor IIB-2 transcription initiation factor IIB-2 transcription initiation factor IIB transcription initiation factor IIB-2 transcription initiation factor IIB-2 transcription initiation factor IIB-2 transcription initiation factor IIB transcription initiation factor IIB transcription initiation factor IIB-2 transcription initiation factor IIB-2 transcription initiation factor IIB-1-like transcription initiation factor IIB-2 uncharacterized protein transcription initiation factor IIB transcription initiation factor IIB-2 transcription initiation factor IIB-2-like transcription initiation factor IIB-2 uncharacterized LOC127901004 transcription initiation factor IIB transcription initiation factor IIB-2 transcription initiation factor IIB-2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 6
ath03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
gma03040 Spliceosome 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00562 Inositol phosphate metabolism 2
zma04070 Phosphatidylinositol signaling system 2
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
bra03015 mRNA surveillance pathway 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03022 Basal transcription factors 4
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 4
mtr03050 Proteasome 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00240 Pyrimidine metabolism 2
hvu01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna03060 Protein export 4
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00564 Glycerophospholipid metabolism 2
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
bdi00190 Oxidative phosphorylation 2
bdi04142 Lysosome 2
bdi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 4
nta00564 Glycerophospholipid metabolism 2
nta04146 Peroxisome 2
nta03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818761 820195 100800061 100790355 101266576 101246877 4347689 103645624 103857988 103859340 100267614 100248187 7484022 11411517 25488804 123104566 123400110 107889411 107918152 125585421 106439245 5716799 8063057 102593687 102583751 102629446 127901004 100828741 107777806 107777807
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