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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g018000v5   uncharacterized protein 
 ath-u.5   AT3G25940   TFIIB zinc-binding protein 
 sly-u.5   101268675   uncharacterized LOC101268675 
 osa-u.5   4333888   uncharacterized LOC4333888 
 vvi-u.5   100853901   DNA-directed RNA polymerase I subunit RPA12 
 ppo-u.5   7481723   uncharacterized LOC7481723 
 mtr-u.5   120577861   DNA-directed RNA polymerase I subunit RPA12 
 mtr-u.5   11424547   DNA-directed RNA polymerase I subunit RPA12 
 mtr-u.5   120580026   DNA-directed RNA polymerase I subunit RPA12 

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Top 50 coexpressed genes to CHLRE_01g018000v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g018000v5 (cre-r.1 coexpression data)

CoexMap"5715151"


creCHLRE_01g018000v5 | Entrez gene ID : 5715151      
Species cre ath sly osa vvi ppo mtr sbi nta bra hvu cit bdi sot zma tae bna ghi gma
Paralog 1 1 1 1 1 1 3 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03020 [list] [network] RNA polymerase (29 genes)
GO BP
GO:0006363 [list] [network] termination of RNA polymerase I transcription  (1 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (95 genes)  IEA  
GO CC
GO:0005736 [list] [network] RNA polymerase I complex  (12 genes)  IEA  
GO MF
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (16 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (213 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (1484 genes)  IEA  
Protein XP_001689933.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 2,  extr 2,  chlo_mito 2  (predict for XP_001689933.1)
Subcellular
localization
TargetP
other 7  (predict for XP_001689933.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g018000v5

.
ath-u.5
for
AT3G25940

.
sly-u.5
for
101268675

.
osa-u.5
for
4333888

.
vvi-u.5
for
100853901

.
ppo-u.5
for
7481723

.
mtr-u.5
for
120577861

.
mtr-u.5
for
11424547

.
mtr-u.5
for
120580026

.


Ortholog ID: 5762
Species ath gma sly osa bra vvi ppo mtr mtr tae tae hvu ghi ghi cre sbi sot cit bdi nta nta
Symbol AT3G25940 LOC100527489 LOC101268675 LOC4333888 LOC103872808 LOC100853901 LOC7481723 LOC11424547 LOC120577857 LOC123087107 LOC123095863 LOC123447452 LOC107938112 LOC107940714 CHLRE_01g018000v5 LOC8063391 LOC102582939 LOC102611182 LOC100824554 LOC107816681 LOC107769073
Function* TFIIB zinc-binding protein uncharacterized LOC100527489 uncharacterized LOC101268675 uncharacterized LOC4333888 DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12 uncharacterized LOC7481723 DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12-like DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12 uncharacterized protein DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12-like uncharacterized LOC102611182 DNA-directed RNA polymerase I subunit RPA12 uncharacterized LOC107816681 uncharacterized LOC107769073
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 3
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
osa03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 8
bra03040 Spliceosome 4
bra03018 RNA degradation 3
bra03013 Nucleocytoplasmic transport 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 10
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 8
hvu03018 RNA degradation 4
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
cre03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822191 100527489 101268675 4333888 103872808 100853901 7481723 11424547 120577857 123087107 123095863 123447452 107938112 107940714 5715151 8063391 102582939 102611182 100824554 107816681 107769073
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