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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g035500v5   uncharacterized protein 
 ath-u.5   VPS34   vacuolar protein sorting 34 
 gma-u.5   547983   phosphatidylinositol 3-kinase 
 gma-u.5   100778348   phosphatidylinositol 3-kinase, nodule isoform-like 
 sly-u.5   101250591   phosphatidylinositol 3-kinase, root isoform 
 osa-u.5   4337982   phosphatidylinositol 3-kinase, root isoform 
 osa-u.5   4345232   phosphatidylinositol 3-kinase, root isoform 
 zma-u.5   103653397   phosphatidylinositol 3-kinase, root isoform 
 vvi-u.5   100263708   phosphatidylinositol 3-kinase, root isoform 
 ppo-u.5   7484773   phosphatidylinositol 3-kinase, root isoform 
 mtr-u.5   11415599   phosphatidylinositol 3-kinase, root isoform 

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Top 50 coexpressed genes to CHLRE_01g035500v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g035500v5 (cre-r.1 coexpression data)

CoexMap"5715461"


creCHLRE_01g035500v5 | Entrez gene ID : 5715461    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00562 [list] [network] Inositol phosphate metabolism (23 genes)
cre04070 [list] [network] Phosphatidylinositol signaling system (27 genes)
cre04136 [list] [network] Autophagy - other (16 genes)
cre04145 [list] [network] Phagosome (29 genes)
GO BP
GO:0036092 [list] [network] phosphatidylinositol-3-phosphate biosynthetic process  (1 genes)  IEA  
GO:0030242 [list] [network] autophagy of peroxisome  (3 genes)  IEA  
GO:0048015 [list] [network] phosphatidylinositol-mediated signaling  (4 genes)  IEA  
GO:0000045 [list] [network] autophagosome assembly  (17 genes)  IEA  
GO:0006897 [list] [network] endocytosis  (25 genes)  IEA  
GO CC
GO:0034271 [list] [network] phosphatidylinositol 3-kinase complex, class III, type I  (3 genes)  IEA  
GO:0034272 [list] [network] phosphatidylinositol 3-kinase complex, class III, type II  (3 genes)  IEA  
GO:0000407 [list] [network] phagophore assembly site  (13 genes)  IEA  
GO:0005777 [list] [network] peroxisome  (32 genes)  IEA  
GO:0005768 [list] [network] endosome  (71 genes)  IEA  
GO:0016020 [list] [network] membrane  (1543 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0016303 [list] [network] 1-phosphatidylinositol-3-kinase activity  (1 genes)  IEA  
Protein XP_042928627.1 [sequence] [blastp]
Subcellular
localization
wolf
pero 4,  cyto 3,  chlo 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_042928627.1)
Subcellular
localization
TargetP
mito 7  (predict for XP_042928627.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g035500v5

.
ath-u.5
for
VPS34

.
gma-u.5
for
547983

.
gma-u.5
for
100778348

.
sly-u.5
for
101250591

.
osa-u.5
for
4337982

.
osa-u.5
for
4345232

.
zma-u.5
for
103653397

.
vvi-u.5
for
100263708

.
ppo-u.5
for
7484773

.
mtr-u.5
for
11415599

.


Ortholog ID: 9268
Species ath gma gma sly osa osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol VPS34 LOC100778348 LOC547983 LOC101250591 LOC4337982 LOC4345232 LOC103653397 LOC103838506 LOC100263708 LOC7484773 LOC11415599 LOC123110461 LOC123102279 LOC123398821 LOC107922365 LOC107916519 LOC106381976 LOC106429126 CHLRE_01g035500v5 LOC110436820 LOC102588478 LOC102620738 LOC100824299 LOC100832757 LOC107795370 LOC107788462
Function* vacuolar protein sorting 34 phosphatidylinositol 3-kinase, nodule isoform-like phosphatidylinositol 3-kinase phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase VPS34 phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase VPS34 phosphatidylinositol 3-kinase VPS34 uncharacterized protein phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, nodule isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 3
ath04141 Protein processing in endoplasmic reticulum 2
ath04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
gma04136 Autophagy - other 3
gma00562 Inositol phosphate metabolism 2
gma04070 Phosphatidylinositol signaling system 2
gma04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 4
gma03018 RNA degradation 2
gma03015 mRNA surveillance pathway 2
gma00562 Inositol phosphate metabolism 2
gma04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04136 Autophagy - other 4
sly00562 Inositol phosphate metabolism 2
sly04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04136 Autophagy - other 6
osa00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
ppo04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00562 Inositol phosphate metabolism 2
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 9
tae00562 Inositol phosphate metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 10
tae00562 Inositol phosphate metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04136 Autophagy - other 3
hvu04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 8
ghi00510 N-Glycan biosynthesis 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 4
ghi03460 Fanconi anemia pathway 4
ghi00510 N-Glycan biosynthesis 2
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 6
bna03420 Nucleotide excision repair 5
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
bna04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 9
bna03420 Nucleotide excision repair 6
bna04141 Protein processing in endoplasmic reticulum 3
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04136 Autophagy - other 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 4
sbi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot04146 Peroxisome 2
sot04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00562 Inositol phosphate metabolism 2
cit03420 Nucleotide excision repair 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 4
bdi00190 Oxidative phosphorylation 2
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 8
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 6
nta00071 Fatty acid degradation 3
nta00592 alpha-Linolenic acid metabolism 3
nta01212 Fatty acid metabolism 3
nta00440 Phosphonate and phosphinate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00071 Fatty acid degradation 3
nta00592 alpha-Linolenic acid metabolism 3
nta01212 Fatty acid metabolism 3
nta00440 Phosphonate and phosphinate metabolism 2
nta00564 Glycerophospholipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842344 100778348 547983 101250591 4337982 4345232 103653397 103838506 100263708 7484773 11415599 123110461 123102279 123398821 107922365 107916519 106381976 106429126 5715461 110436820 102588478 102620738 100824299 100832757 107795370 107788462
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