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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g035850v5   uncharacterized protein 
 ath-u.5   CEF   uncharacterized protein 
 ath-u.5   AT4G32640   Sec23/Sec24 protein transport family protein 
 gma-u.5   100813263   protein transport protein Sec24-like At4g32640 
 gma-u.5   100797752   protein transport protein Sec24-like At4g32640 
 sly-u.5   101260822   protein transport protein SEC24 C-like 
 sly-u.5   101253501   protein transport protein SEC24 B-like 
 osa-u.5   4352115   protein transport protein SEC24 B 
 osa-u.5   4350517   protein transport protein SEC24 B 
 zma-u.5   103646939   protein transport protein Sec24-like CEF 
 zma-u.5   100382471   Protein transport protein Sec24-like CEF 
 vvi-u.5   100265768   protein transport protein SEC24 C 
 ppo-u.5   18098930   protein transport protein Sec24-like At4g32640 
 ppo-u.5   18110981   protein transport protein Sec24-like At4g32640 
 mtr-u.5   25485594   protein transport protein Sec24-like At4g32640 

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Top 50 coexpressed genes to CHLRE_01g035850v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g035850v5 (cre-r.1 coexpression data)

CoexMap"5715469"


creCHLRE_01g035850v5 | Entrez gene ID : 5715469    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 2 2 2 2 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre04141 [list] [network] Protein processing in endoplasmic reticulum (76 genes)
GO BP
GO:0090110 [list] [network] COPII-coated vesicle cargo loading  (5 genes)  IEA  
GO:0006888 [list] [network] endoplasmic reticulum to Golgi vesicle-mediated transport  (53 genes)  IEA  
GO:0006886 [list] [network] intracellular protein transport  (159 genes)  IEA  
GO CC
GO:0030127 [list] [network] COPII vesicle coat  (7 genes)  IEA  
GO:0070971 [list] [network] endoplasmic reticulum exit site  (9 genes)  IEA  
GO MF
GO:0000149 [list] [network] SNARE binding  (30 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (213 genes)  IEA  
Protein XP_042928633.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 2,  mito 1,  cyto_nucl 1,  nucl_plas 1  (predict for XP_042928633.1)
Subcellular
localization
TargetP
other 5,  chlo 3  (predict for XP_042928633.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g035850v5

.
ath-u.5
for
CEF

.
ath-u.5
for
AT4G32640

.
gma-u.5
for
100813263

.
gma-u.5
for
100797752

.
sly-u.5
for
101260822

.
sly-u.5
for
101253501

.
osa-u.5
for
4352115

.
osa-u.5
for
4350517

.
zma-u.5
for
103646939

.
zma-u.5
for
100382471

.
vvi-u.5
for
100265768

.
ppo-u.5
for
18098930

.
ppo-u.5
for
18110981

.
mtr-u.5
for
25485594

.


Ortholog ID: 4570
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi bdi nta nta
Symbol CEF AT4G32640 LOC100797752 LOC100813263 LOC101260822 LOC101253501 LOC4350517 LOC4352115 LOC100382471 LOC103646939 LOC103848077 LOC103850674 LOC100265768 LOC18110981 LOC18098930 LOC25485594 LOC123110932 LOC123102750 LOC123447882 LOC107943994 LOC107924048 LOC111210294 LOC106410638 CHLRE_01g035850v5 LOC8075772 LOC102597069 LOC102595564 LOC102609457 LOC100821842 LOC100824425 LOC107787821 LOC107762318
Function* uncharacterized protein Sec23/Sec24 protein transport family protein protein transport protein Sec24-like At4g32640 protein transport protein Sec24-like At4g32640 protein transport protein SEC24 C-like protein transport protein SEC24 B-like protein transport protein SEC24 B protein transport protein SEC24 B Protein transport protein Sec24-like CEF protein transport protein Sec24-like CEF protein transport protein Sec24-like CEF protein transport protein Sec24-like At4g32640 protein transport protein SEC24 C protein transport protein Sec24-like At4g32640 protein transport protein Sec24-like At4g32640 protein transport protein Sec24-like At4g32640 protein transport protein Sec24-like CEF protein transport protein Sec24-like CEF protein transport protein Sec24-like CEF protein transport protein Sec24-like At4g32640 protein transport protein Sec24-like At4g32640 protein transport protein Sec24-like CEF protein transport protein Sec24-like At4g32640 uncharacterized protein protein transport protein Sec24-like CEF protein transport protein Sec24-like At4g32640 protein transport protein Sec24-like CEF protein transport protein Sec24-like At4g32640 protein transport protein Sec24-like CEF protein transport protein Sec24-like CEF protein transport protein SEC24 C protein transport protein SEC24 C
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 7
ath04142 Lysosome 3
ath04144 Endocytosis 3
ath05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 6
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 6
gma04142 Lysosome 4
gma04144 Endocytosis 2
gma05100 Bacterial invasion of epithelial cells 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 4
gma04144 Endocytosis 3
gma05100 Bacterial invasion of epithelial cells 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 4
sly04142 Lysosome 3
sly04144 Endocytosis 3
sly05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 9
osa04145 Phagosome 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
osa04142 Lysosome 2
osa04144 Endocytosis 2
osa05100 Bacterial invasion of epithelial cells 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 8
zma00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 8
zma03018 RNA degradation 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 6
bra04142 Lysosome 4
bra05100 Bacterial invasion of epithelial cells 4
bra04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 5
vvi04141 Protein processing in endoplasmic reticulum 3
vvi05100 Bacterial invasion of epithelial cells 3
vvi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 5
ppo04144 Endocytosis 4
ppo04142 Lysosome 3
ppo05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 5
ppo04144 Endocytosis 3
ppo04142 Lysosome 2
ppo05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 5
mtr04144 Endocytosis 2
mtr05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 4
tae00562 Inositol phosphate metabolism 3
tae04070 Phosphatidylinositol signaling system 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 7
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 6
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 8
bna03015 mRNA surveillance pathway 5
bna04382 Cornified envelope formation 3
bna04120 Ubiquitin mediated proteolysis 2
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 6
cre03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi04141 Protein processing in endoplasmic reticulum 3
sbi04142 Lysosome 3
sbi03013 Nucleocytoplasmic transport 3
sbi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 7
sot04144 Endocytosis 4
sot05100 Bacterial invasion of epithelial cells 3
sot04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 4
cit04142 Lysosome 3
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 4
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01250 Biosynthesis of nucleotide sugars 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 823559 829399 100797752 100813263 101260822 101253501 4350517 4352115 100382471 103646939 103848077 103850674 100265768 18110981 18098930 25485594 123110932 123102750 123447882 107943994 107924048 111210294 106410638 5715469 8075772 102597069 102595564 102609457 100821842 100824425 107787821 107762318
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