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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g042900v5   uncharacterized protein 
 ath-u.5   DIM1A   Ribosomal RNA adenine dimethylase family protein 
 gma-u.5   100819707   S-adenosylmethionine-dependent methyltransferases superfamily protein 
 gma-u.5   100786901   ribosomal RNA small subunit methyltransferase 
 sly-u.5   101247757   ribosomal RNA small subunit methyltransferase 
 osa-u.5   4348215   ribosomal RNA small subunit methyltransferase 
 zma-u.5   100284053   uncharacterized LOC100284053 
 vvi-u.5   100245295   ribosomal RNA small subunit methyltransferase 
 ppo-u.5   7491259   ribosomal RNA small subunit methyltransferase 
 mtr-u.5   25491093   ribosomal RNA small subunit methyltransferase 
 mtr-u.5   11410499   ribosomal RNA small subunit methyltransferase 

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Top 50 coexpressed genes to CHLRE_01g042900v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g042900v5 (cre-r.1 coexpression data)

CoexMap"5715604"


creCHLRE_01g042900v5 | Entrez gene ID : 5715604    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031167 [list] [network] rRNA methylation  (22 genes)  IEA  
GO CC
GO:0005759 [list] [network] mitochondrial matrix  (126 genes)  IEA  
GO MF
GO:0000179 [list] [network] rRNA (adenine-N6,N6-)-dimethyltransferase activity  (2 genes)  IEA  
Protein XP_042928752.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  cyto 3,  chlo 2  (predict for XP_042928752.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042928752.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g042900v5

.
ath-u.5
for
DIM1A

.
gma-u.5
for
100819707

.
gma-u.5
for
100786901

.
sly-u.5
for
101247757

.
osa-u.5
for
4348215

.
zma-u.5
for
100284053

.
vvi-u.5
for
100245295

.
ppo-u.5
for
7491259

.
mtr-u.5
for
25491093

.
mtr-u.5
for
11410499

.


Ortholog ID: 6532
Species ath gma gma sly osa zma bra bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol DIM1A LOC100786901 LOC100819707 LOC101247757 LOC4348215 LOC100284053 LOC103866382 LOC103858246 LOC100245295 LOC7491259 LOC11410499 LOC25491093 LOC123165446 LOC123147809 LOC123407875 LOC107909992 LOC107954362 LOC106404480 LOC106438329 CHLRE_01g042900v5 LOC8076138 LOC102605279 LOC102628306 LOC100829299 LOC107768427 LOC107821695
Function* Ribosomal RNA adenine dimethylase family protein ribosomal RNA small subunit methyltransferase S-adenosylmethionine-dependent methyltransferases superfamily protein ribosomal RNA small subunit methyltransferase ribosomal RNA small subunit methyltransferase uncharacterized LOC100284053 ribosomal RNA small subunit methyltransferase ribosomal RNA small subunit methyltransferase ribosomal RNA small subunit methyltransferase ribosomal RNA small subunit methyltransferase ribosomal RNA small subunit methyltransferase ribosomal RNA small subunit methyltransferase ribosomal RNA small subunit methyltransferase ribosomal RNA small subunit methyltransferase ribosomal RNA small subunit methyltransferase ribosomal RNA small subunit methyltransferase ribosomal RNA small subunit methyltransferase ribosomal RNA small subunit methyltransferase ribosomal RNA small subunit methyltransferase uncharacterized protein ribosomal RNA small subunit methyltransferase ribosomal RNA small subunit methyltransferase ribosomal RNA small subunit methyltransferase ribosomal RNA small subunit methyltransferase ribosomal RNA small subunit methyltransferase-like ribosomal RNA small subunit methyltransferase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
ath03008 Ribosome biogenesis in eukaryotes 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 10
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 5
hvu03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 3
ghi00860 Porphyrin metabolism 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 3
ghi00860 Porphyrin metabolism 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
bdi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819355 100786901 100819707 101247757 4348215 100284053 103866382 103858246 100245295 7491259 11410499 25491093 123165446 123147809 123407875 107909992 107954362 106404480 106438329 5715604 8076138 102605279 102628306 100829299 107768427 107821695
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