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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g052400v5   uncharacterized protein 
 ath-u.5   CCB3   cofactor assembly, complex C (B6F) 
 gma-u.5   100793885   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic 
 gma-u.5   100500538   YGGT domain-containing protein 
 sly-u.5   101254143   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic 
 osa-u.5   4324472   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic 
 zma-u.5   100382482   Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 chloroplastic 
 vvi-u.5   100244373   uncharacterized LOC100244373 
 ppo-u.5   7464785   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic 
 mtr-u.5   25485015   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic 

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Top 50 coexpressed genes to CHLRE_01g052400v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g052400v5 (cre-r.1 coexpression data)

CoexMap"5715778"


creCHLRE_01g052400v5 | Entrez gene ID : 5715778      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (43 genes)  IEA  
GO MF
Protein XP_001689790.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 3,  nucl 1,  golg 1  (predict for XP_001689790.2)
Subcellular
localization
TargetP
chlo 7  (predict for XP_001689790.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g052400v5

.
ath-u.5
for
CCB3

.
gma-u.5
for
100793885

.
gma-u.5
for
100500538

.
sly-u.5
for
101254143

.
osa-u.5
for
4324472

.
zma-u.5
for
100382482

.
vvi-u.5
for
100244373

.
ppo-u.5
for
7464785

.
mtr-u.5
for
25485015

.


Ortholog ID: 9128
Species ath gma gma sly osa zma bra vvi ppo mtr tae hvu ghi ghi bna bna cre sot cit nta nta
Symbol CCB3 LOC100793885 LOC100500538 LOC101254143 LOC4324472 LOC100382482 LOC103868299 LOC100244373 LOC7464785 LOC25485015 LOC123080927 LOC123445640 LOC107923847 LOC121223589 LOC125605518 LOC106390202 CHLRE_01g052400v5 LOC102587391 LOC102619327 LOC107786710 LOC107777276
Function* cofactor assembly, complex C (B6F) protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic YGGT domain-containing protein protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic uncharacterized LOC100244373 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic uncharacterized LOC123080927 ylmG homolog protein 1-1, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic-like protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic-like uncharacterized protein protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic-like protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 9
bra00190 Oxidative phosphorylation 2
bra00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00710 Carbon fixation by Calvin cycle 3
vvi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 6
hvu01200 Carbon metabolism 6
hvu00630 Glyoxylate and dicarboxylate metabolism 4
hvu00710 Carbon fixation by Calvin cycle 4
hvu00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cre01240 Biosynthesis of cofactors 2
cre00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 7
nta03060 Protein export 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 833608 100793885 100500538 101254143 4324472 100382482 103868299 100244373 7464785 25485015 123080927 123445640 107923847 121223589 125605518 106390202 5715778 102587391 102619327 107786710 107777276
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