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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g486900v5   uncharacterized protein 
 ath-u.5   AT5G67220   FMN-linked oxidoreductases superfamily protein 
 gma-u.5   100789809   tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like 
 gma-u.5   100812753   tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like 
 sly-u.5   101247588   uncharacterized LOC101247588 
 sly-u.5   101245512   tRNA-dihydrouridine synthase 1-like protein 
 osa-u.5   4342049   uncharacterized LOC4342049 
 zma-u.5   100274382   FMN-linked oxidoreductase superfamily protein 
 vvi-u.5   100249291   uncharacterized LOC100249291 
 ppo-u.5   7483096   uncharacterized LOC7483096 
 mtr-u.5   25493484   tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like 

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Top 50 coexpressed genes to CHLRE_12g486900v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g486900v5 (cre-r.1 coexpression data)

CoexMap"5716635"


creCHLRE_12g486900v5 | Entrez gene ID : 5716635      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0008033 [list] [network] tRNA processing  (105 genes)  IEA  
GO CC
GO MF
GO:0017150 [list] [network] tRNA dihydrouridine synthase activity  (7 genes)  IEA  
GO:0050660 [list] [network] flavin adenine dinucleotide binding  (95 genes)  IEA  
Protein XP_042918082.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  nucl 1,  mito 1,  pero 1  (predict for XP_042918082.1)
Subcellular
localization
TargetP
other 5,  mito 3  (predict for XP_042918082.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g486900v5

.
ath-u.5
for
AT5G67220

.
gma-u.5
for
100789809

.
gma-u.5
for
100812753

.
sly-u.5
for
101247588

.
sly-u.5
for
101245512

.
osa-u.5
for
4342049

.
zma-u.5
for
100274382

.
vvi-u.5
for
100249291

.
ppo-u.5
for
7483096

.
mtr-u.5
for
25493484

.


Ortholog ID: 7015
Species ath gma gma sly sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol AT5G67220 LOC100789809 LOC100812753 LOC101245512 LOC101247588 LOC4342049 LOC100274382 LOC103829527 LOC103837738 LOC100249291 LOC7483096 LOC25493484 LOC123156509 LOC123148256 LOC123410196 LOC107931692 LOC107932593 LOC106390335 LOC106366303 CHLRE_12g486900v5 LOC8064984 LOC102583164 LOC102579683 LOC102626482 LOC100834475 LOC107810562 LOC107798052
Function* FMN-linked oxidoreductases superfamily protein tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like tRNA-dihydrouridine synthase 1-like protein uncharacterized LOC101247588 uncharacterized LOC4342049 FMN-linked oxidoreductase superfamily protein tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like uncharacterized LOC100249291 uncharacterized LOC7483096 tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like uncharacterized protein tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like uncharacterized LOC102626482 tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like uncharacterized LOC107810562 uncharacterized LOC107798052
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 4
ath01210 2-Oxocarboxylic acid metabolism 3
ath03083 Polycomb repressive complex 2
ath00270 Cysteine and methionine metabolism 2
ath00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00230 Purine metabolism 2
gma00730 Thiamine metabolism 2
gma01232 Nucleotide metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
sly00970 Aminoacyl-tRNA biosynthesis 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00230 Purine metabolism 2
bdi00730 Thiamine metabolism 2
bdi01232 Nucleotide metabolism 2
bdi01240 Biosynthesis of cofactors 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03010 Ribosome 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836857 100789809 100812753 101245512 101247588 4342049 100274382 103829527 103837738 100249291 7483096 25493484 123156509 123148256 123410196 107931692 107932593 106390335 106366303 5716635 8064984 102583164 102579683 102626482 100834475 107810562 107798052
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