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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g487100v5   uncharacterized protein 
 ath-u.5   OVA1   methionyl-tRNA synthetase / methionine-tRNA ligase / MetRS (cpMetRS) 
 gma-u.5   100818412   methionine--tRNA ligase, chloroplastic/mitochondrial 
 gma-u.5   100814644   methionine--tRNA ligase, chloroplastic/mitochondrial 
 sly-u.5   101260937   methionine--tRNA ligase, chloroplastic/mitochondrial 
 osa-u.5   4332018   methionine--tRNA ligase, chloroplastic/mitochondrial 
 zma-u.5   103631953   methionine--tRNA ligase, chloroplastic/mitochondrial 
 vvi-u.5   100251286   methionine--tRNA ligase, chloroplastic/mitochondrial 
 ppo-u.5   7489580   methionine--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.5   25485698   methionine--tRNA ligase, chloroplastic/mitochondrial 

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Top 50 coexpressed genes to CHLRE_12g487100v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g487100v5 (cre-r.1 coexpression data)

CoexMap"5716638"


creCHLRE_12g487100v5 | Entrez gene ID : 5716638      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00450 [list] [network] Selenocompound metabolism (14 genes)
cre00970 [list] [network] Aminoacyl-tRNA biosynthesis (65 genes)
GO BP
GO:0006431 [list] [network] methionyl-tRNA aminoacylation  (2 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (41 genes)  IEA  
GO:0005739 [list] [network] mitochondrion  (441 genes)  IEA  
GO MF
GO:0004825 [list] [network] methionine-tRNA ligase activity  (2 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_042918077.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 1,  plas 1,  extr 1,  cyto_mito 1  (predict for XP_042918077.1)
Subcellular
localization
TargetP
chlo 6,  mito 3  (predict for XP_042918077.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g487100v5

.
ath-u.5
for
OVA1

.
gma-u.5
for
100818412

.
gma-u.5
for
100814644

.
sly-u.5
for
101260937

.
osa-u.5
for
4332018

.
zma-u.5
for
103631953

.
vvi-u.5
for
100251286

.
ppo-u.5
for
7489580

.
mtr-u.5
for
25485698

.


Ortholog ID: 9541
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol OVA1 LOC100814644 LOC101260937 LOC4332018 LOC103631953 LOC103841446 LOC100251286 LOC7489580 LOC25485698 LOC123093021 LOC123098306 LOC123449359 LOC107938201 LOC107897824 LOC111212405 LOC106414261 CHLRE_12g487100v5 LOC8081851 LOC102605729 LOC102613489 LOC100843706 LOC107827843 LOC107821561
Function* methionyl-tRNA synthetase / methionine-tRNA ligase / MetRS (cpMetRS) methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial-like uncharacterized protein methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial methionine--tRNA ligase, chloroplastic/mitochondrial-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 5
ath00261 Monobactam biosynthesis 2
ath00300 Lysine biosynthesis 2
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 5
gma00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 2
ppo00970 Aminoacyl-tRNA biosynthesis 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 10
tae00450 Selenocompound metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 6
tae00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00450 Selenocompound metabolism 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00450 Selenocompound metabolism 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00290 Valine, leucine and isoleucine biosynthesis 4
bna00770 Pantothenate and CoA biosynthesis 4
bna01210 2-Oxocarboxylic acid metabolism 4
bna01230 Biosynthesis of amino acids 4
bna00230 Purine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 5
bna00290 Valine, leucine and isoleucine biosynthesis 4
bna00770 Pantothenate and CoA biosynthesis 4
bna01210 2-Oxocarboxylic acid metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta00450 Selenocompound metabolism 2
nta01240 Biosynthesis of cofactors 2
nta00230 Purine metabolism 2
nta00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 7
nta00450 Selenocompound metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824706 100814644 101260937 4332018 103631953 103841446 100251286 7489580 25485698 123093021 123098306 123449359 107938201 107897824 111212405 106414261 5716638 8081851 102605729 102613489 100843706 107827843 107821561
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