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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g491150v5   uncharacterized protein 
 ath-u.5   AT3G11530   Vacuolar protein sorting 55 (VPS55) family protein 
 ath-u.5   AT1G32410   Vacuolar protein sorting 55 (VPS55) family protein 
 gma-u.5   100800586   vacuolar protein sorting-associated protein 55 homolog 
 gma-u.5   100500037   uncharacterized LOC100500037 
 sly-u.5   101260847   vacuolar protein sorting-associated protein 55 homolog 
 sly-u.5   101245787   vacuolar protein sorting-associated protein 55 homolog 
 osa-u.5   4324475   vacuolar protein sorting-associated protein 55 homolog 
 osa-u.5   4331048   vacuolar protein sorting-associated protein 55 homolog 
 zma-u.5   100282432   uncharacterized LOC100282432 
 zma-u.5   100281250   uncharacterized LOC100281250 
 vvi-u.5   100249425   vacuolar protein sorting-associated protein 55 homolog 
 vvi-u.5   100248887   vacuolar protein sorting-associated protein 55-like 
 ppo-u.5   7466022   vacuolar protein sorting-associated protein 55 homolog 
 ppo-u.5   18094209   vacuolar protein sorting-associated protein 55 homolog 
 ppo-u.5   18096930   vacuolar protein sorting-associated protein 55 homolog 
 mtr-u.5   11436518   vacuolar protein sorting-associated protein 55 homolog 
 mtr-u.5   25499408   vacuolar protein sorting-associated protein 55 homolog 

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Top 50 coexpressed genes to CHLRE_12g491150v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g491150v5 (cre-r.1 coexpression data)

CoexMap"5716714"


creCHLRE_12g491150v5 | Entrez gene ID : 5716714      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 2 2 2 2 2 3 2 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032511 [list] [network] late endosome to vacuole transport via multivesicular body sorting pathway  (16 genes)  IEA  
GO CC
GO:0005768 [list] [network] endosome  (71 genes)  IEA  
GO MF
Protein XP_001690943.2 [sequence] [blastp]
Subcellular
localization
wolf
vacu 9,  cyto 1,  extr 1  (predict for XP_001690943.2)
Subcellular
localization
TargetP
scret 9  (predict for XP_001690943.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g491150v5

.
ath-u.5
for
AT3G11530

.
ath-u.5
for
AT1G32410

.
gma-u.5
for
100800586

.
gma-u.5
for
100500037

.
sly-u.5
for
101260847

.
sly-u.5
for
101245787

.
osa-u.5
for
4324475

.
osa-u.5
for
4331048

.
zma-u.5
for
100282432

.
zma-u.5
for
100281250

.
vvi-u.5
for
100249425

.
vvi-u.5
for
100248887

.
ppo-u.5
for
7466022

.
ppo-u.5
for
18094209

.
ppo-u.5
for
18096930

.
mtr-u.5
for
11436518

.
mtr-u.5
for
25499408

.


Ortholog ID: 2724
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT3G11530 AT1G32410 LOC100306202 LOC100500037 LOC101260847 LOC101245787 LOC4331048 LOC4324475 LOC100282432 LOC100281250 LOC103870336 LOC103840162 LOC100248887 LOC100249425 LOC18096930 LOC7466022 LOC25499408 LOC11436518 LOC123139328 LOC123063608 LOC107896332 LOC107933731 LOC106452484 LOC106349351 CHLRE_12g491150v5 LOC8074125 LOC8084658 LOC102593735 LOC102600402 LOC102621305 LOC102612376 LOC100845087 LOC100828070 LOC107818791 LOC107806774
Function* Vacuolar protein sorting 55 (VPS55) family protein Vacuolar protein sorting 55 (VPS55) family protein uncharacterized LOC100306202 uncharacterized LOC100500037 vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog uncharacterized LOC100282432 uncharacterized LOC100281250 vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55-like vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog uncharacterized protein vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog vacuolar protein sorting-associated protein 55 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04145 Phagosome 6
ath00190 Oxidative phosphorylation 5
ath04142 Lysosome 5
ath04144 Endocytosis 3
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 5
osa04144 Endocytosis 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 3
bra04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 4
vvi04145 Phagosome 3
vvi04142 Lysosome 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo00190 Oxidative phosphorylation 2
ppo04145 Phagosome 2
ppo03020 RNA polymerase 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04142 Lysosome 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 5
mtr04145 Phagosome 5
mtr04142 Lysosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 5
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae02010 ABC transporters 3
tae04146 Peroxisome 3
tae04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 4
bna04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 3
cre04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03015 mRNA surveillance pathway 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 5
sot04145 Phagosome 3
sot04120 Ubiquitin mediated proteolysis 3
sot03272 Virion - Hepatitis viruses 2
sot04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820326 840134 100306202 100500037 101260847 101245787 4331048 4324475 100282432 100281250 103870336 103840162 100248887 100249425 18096930 7466022 25499408 11436518 123139328 123063608 107896332 107933731 106452484 106349351 5716714 8074125 8084658 102593735 102600402 102621305 102612376 100845087 100828070 107818791 107806774
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