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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g304300v5   uncharacterized protein 
 ath-u.5   PAF1   proteasome alpha subunit F1 
 ath-u.5   PAF2   20S proteasome alpha subunit F2 
 gma-u.5   100819051   proteasome subunit alpha type-1-B 
 gma-u.5   100797380   proteasome subunit alpha type-1-A 
 gma-u.5   100792921   proteasome subunit alpha type-1-B 
 sly-u.5   101266633   proteasome subunit alpha type-1-A 
 osa-u.5   4328215   proteasome subunit alpha type-1-like 
 zma-u.5   100282706   proteasome subunit alpha type 1 
 bra-r.6   103848568   proteasome subunit alpha type-1-A 
 bra-r.6   103839280   proteasome subunit alpha type-1-A 
 bra-r.6   103833084   proteasome subunit alpha type-1-B 
 vvi-u.5   100257364   proteasome subunit alpha type-1-B 
 ppo-u.5   7477623   proteasome subunit alpha type-1-B 
 ppo-u.5   7471943   proteasome subunit alpha type-1-A 
 mtr-u.5   11428880   proteasome subunit alpha type-1-B 
 mtr-u.5   25482164   proteasome subunit alpha type-1-B 
 tae-r.2   123136109   proteasome subunit alpha type-1 
 tae-r.2   123132080   proteasome subunit alpha type-1 
 tae-r.2   123143616   proteasome subunit alpha type-1 
 hvu-r.1   123404604   proteasome subunit alpha type-1 
 ghi-r.1   107957580   proteasome subunit alpha type-1-B 
 ghi-r.1   107935086   proteasome subunit alpha type-1-B 
 ghi-r.1   107922006   proteasome subunit alpha type-1-A-like 
 bna-r.1   106371863   proteasome subunit alpha type-1-B 
 bna-r.1   106447076   proteasome subunit alpha type-1-A 
 bna-r.1   106430432   proteasome subunit alpha type-1-A 
 sbi-r.1   8069936   proteasome subunit alpha type-1 
 sot-r.1   102597919   proteasome subunit alpha type-1-B-like 
 sot-r.1   102592412   proteasome subunit alpha type-1-B-like 
 cit-r.1   102617944   proteasome subunit alpha type-1-B 
 bdi-r.1   100843181   proteasome subunit alpha type-1 
 nta-r.1   107819554   proteasome subunit alpha type-1-A 
 nta-r.1   107799726   proteasome subunit alpha type-1-A-like 
 nta-r.1   107786955   proteasome subunit alpha type-1-A 

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Top 50 coexpressed genes to CHLRE_06g304300v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g304300v5 (cre-r.1 coexpression data)

CoexMap"5716914"


creCHLRE_06g304300v5 | Entrez gene ID : 5716914      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 2 3 1 1 1 3 1 2 2 3 1 3 3 1 2 1 1 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03050 [list] [network] Proteasome (36 genes)
GO BP
GO:0051603 [list] [network] proteolysis involved in protein catabolic process  (216 genes)  IEA  
GO CC
GO:0019773 [list] [network] proteasome core complex, alpha-subunit complex  (7 genes)  IEA  
GO:0005839 [list] [network] proteasome core complex  (16 genes)  IEA  
GO MF
Protein XP_042924378.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 3,  nucl 2  (predict for XP_042924378.1)
Subcellular
localization
TargetP
other 5  (predict for XP_042924378.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g304300v5
ath-u.5
for
PAF1
ath-u.5
for
PAF2
gma-u.5
for
100819051
gma-u.5
for
100797380
gma-u.5
for
100792921
sly-u.5
for
101266633
osa-u.5
for
4328215
zma-u.5
for
100282706
bra-r.6
for
103848568
bra-r.6
for
103839280
bra-r.6
for
103833084
vvi-u.5
for
100257364
ppo-u.5
for
7477623
ppo-u.5
for
7471943
mtr-u.5
for
11428880
mtr-u.5
for
25482164
tae-r.2
for
123136109
tae-r.2
for
123132080
tae-r.2
for
123143616
hvu-r.1
for
123404604
ghi-r.1
for
107957580
ghi-r.1
for
107935086
ghi-r.1
for
107922006
bna-r.1
for
106371863
bna-r.1
for
106447076
bna-r.1
for
106430432
sbi-r.1
for
8069936
sot-r.1
for
102597919
sot-r.1
for
102592412
cit-r.1
for
102617944
bdi-r.1
for
100843181
nta-r.1
for
107819554
nta-r.1
for
107799726
nta-r.1
for
107786955


Ortholog ID: 4627
Species cre ath ath gma gma gma sly osa zma bra bra bra vvi ppo ppo mtr mtr tae tae tae hvu ghi ghi ghi bna bna bna sbi sot sot cit bdi nta nta nta
Symbol CHLRE_06g304300v5 PAF1 PAF2 LOC100819051 LOC100797380 LOC100792921 LOC101266633 LOC4328215 LOC100282706 LOC103848568 LOC103839280 LOC103833084 LOC100257364 LOC7477623 LOC7471943 LOC11428880 LOC25482164 LOC123136109 LOC123132080 LOC123143616 LOC123404604 LOC107957580 LOC107922006 LOC107938926 LOC106371863 LOC106406452 LOC106405929 LOC8069936 LOC102597919 LOC102592412 LOC102617944 LOC100843181 LOC107819554 LOC107799726 LOC107822157
Function* uncharacterized protein proteasome alpha subunit F1 20S proteasome alpha subunit F2 proteasome subunit alpha type-1-B proteasome subunit alpha type-1-A proteasome subunit alpha type-1-B proteasome subunit alpha type-1-A proteasome subunit alpha type-1-like proteasome subunit alpha type 1 proteasome subunit alpha type-1-A proteasome subunit alpha type-1-A proteasome subunit alpha type-1-B proteasome subunit alpha type-1-B proteasome subunit alpha type-1-B proteasome subunit alpha type-1-A proteasome subunit alpha type-1-B proteasome subunit alpha type-1-B proteasome subunit alpha type-1 proteasome subunit alpha type-1 proteasome subunit alpha type-1 proteasome subunit alpha type-1 proteasome subunit alpha type-1-B proteasome subunit alpha type-1-A-like proteasome subunit alpha type-1-B proteasome subunit alpha type-1-B proteasome subunit alpha type-1-A proteasome subunit alpha type-1-B proteasome subunit alpha type-1 proteasome subunit alpha type-1-B-like proteasome subunit alpha type-1-B-like proteasome subunit alpha type-1-B proteasome subunit alpha type-1 proteasome subunit alpha type-1-A proteasome subunit alpha type-1-A-like proteasome subunit alpha type-1-B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 14
cre04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 17
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 10
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 13
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 11
mtr04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 14
mtr04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 14
tae00020 Citrate cycle (TCA cycle) 3
tae00190 Oxidative phosphorylation 3
tae01200 Carbon metabolism 3
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 14
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 13
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 11
hvu03018 RNA degradation 2
hvu04141 Protein processing in endoplasmic reticulum 2
hvu00020 Citrate cycle (TCA cycle) 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi04146 Peroxisome 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 6
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 16
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 12
sot04141 Protein processing in endoplasmic reticulum 2
sot00591 Linoleic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 8
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 8
nta03018 RNA degradation 2
nta04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 11
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5716914 834290 841128 100819051 100797380 100792921 101266633 4328215 100282706 103848568 103839280 103833084 100257364 7477623 7471943 11428880 25482164 123136109 123132080 123143616 123404604 107957580 107922006 107938926 106371863 106406452 106405929 8069936 102597919 102592412 102617944 100843181 107819554 107799726 107822157
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