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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7477623   proteasome subunit alpha type-1-B 
 ppo-r.4   7477623   proteasome subunit alpha type-1-B 
 ppo-m.4   7477623   proteasome subunit alpha type-1-B 
 ppo-u.5   7471943   proteasome subunit alpha type-1-A 
 gma-u.5   100819051   proteasome subunit alpha type-1-B 
 gma-u.5   100797380   proteasome subunit alpha type-1-A 
 gma-u.5   100792921   proteasome subunit alpha type-1-B 
 mtr-u.5   25482164   proteasome subunit alpha type-1-B 
 mtr-u.5   11428880   proteasome subunit alpha type-1-B 
 ath-u.5   PAF1   proteasome alpha subunit F1 
 ath-u.5   PAF2   20S proteasome alpha subunit F2 
 vvi-u.5   100257364   proteasome subunit alpha type-1-B 
 sly-u.5   101266633   proteasome subunit alpha type-1-A 
 osa-u.5   4328215   proteasome subunit alpha type-1-like 
 zma-u.5   100282706   proteasome subunit alpha type 1 

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Top 50 coexpressed genes to 7477623 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7477623 (ppo-u.5 coexpression data)

CoexMap"7477623"


ppoLOC7477623 | Entrez gene ID : 7477623    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 3 2 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03050 [list] [network] Proteasome (82 genes)
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (340 genes)  IEA  
GO CC
GO:0019773 [list] [network] proteasome core complex, alpha-subunit complex  (15 genes)  IEA  
GO:0005839 [list] [network] proteasome core complex  (29 genes)  IEA  
GO MF
Protein XP_002307665.3 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 3,  nucl 1,  cysk_nucl 1,  mito 1,  pero 1  (predict for XP_002307665.3)
Subcellular
localization
TargetP
other 8,  mito 4  (predict for XP_002307665.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7477623

.
ppo-r.4
for
7477623

.
ppo-m.4
for
7477623

.
ppo-u.5
for
7471943

.
gma-u.5
for
100819051

.
gma-u.5
for
100797380

.
gma-u.5
for
100792921

.
mtr-u.5
for
25482164

.
mtr-u.5
for
11428880

.
ath-u.5
for
PAF1

.
ath-u.5
for
PAF2

.
vvi-u.5
for
100257364

.
sly-u.5
for
101266633

.
osa-u.5
for
4328215

.
zma-u.5
for
100282706

.


Ortholog ID: 4627
Species ath ath gma gma sly osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol PAF2 PAF1 LOC100792921 LOC100819051 LOC101266633 LOC4328215 LOC100282706 LOC103839280 LOC103848568 LOC100257364 LOC7471943 LOC7477623 LOC11428880 LOC25482164 LOC123136109 LOC123132080 LOC123404604 LOC107957580 LOC107922006 LOC106371863 LOC106405929 CHLRE_06g304300v5 LOC8069936 LOC102597919 LOC102592412 LOC102617944 LOC100843181 LOC107819554 LOC107822157
Function* 20S proteasome alpha subunit F2 proteasome alpha subunit F1 proteasome subunit alpha type-1-B proteasome subunit alpha type-1-B proteasome subunit alpha type-1-A proteasome subunit alpha type-1-like proteasome subunit alpha type 1 proteasome subunit alpha type-1-A proteasome subunit alpha type-1-A proteasome subunit alpha type-1-B proteasome subunit alpha type-1-A proteasome subunit alpha type-1-B proteasome subunit alpha type-1-B proteasome subunit alpha type-1-B proteasome subunit alpha type-1 proteasome subunit alpha type-1 proteasome subunit alpha type-1 proteasome subunit alpha type-1-B proteasome subunit alpha type-1-A-like proteasome subunit alpha type-1-B proteasome subunit alpha type-1-B uncharacterized protein proteasome subunit alpha type-1 proteasome subunit alpha type-1-B-like proteasome subunit alpha type-1-B-like proteasome subunit alpha type-1-B proteasome subunit alpha type-1 proteasome subunit alpha type-1-A proteasome subunit alpha type-1-B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 17
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 13
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 11
mtr04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 14
mtr04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 14
tae00020 Citrate cycle (TCA cycle) 3
tae00190 Oxidative phosphorylation 3
tae01200 Carbon metabolism 3
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 14
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 11
hvu03018 RNA degradation 2
hvu04141 Protein processing in endoplasmic reticulum 2
hvu00020 Citrate cycle (TCA cycle) 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi04146 Peroxisome 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 14
cre04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 6
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 16
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 12
sot04141 Protein processing in endoplasmic reticulum 2
sot00591 Linoleic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 8
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 11
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841128 834290 100792921 100819051 101266633 4328215 100282706 103839280 103848568 100257364 7471943 7477623 11428880 25482164 123136109 123132080 123404604 107957580 107922006 106371863 106405929 5716914 8069936 102597919 102592412 102617944 100843181 107819554 107822157
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