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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g302650v5   uncharacterized protein 
 gma-u.5   100805818   ribosomal RNA large subunit methyltransferase E 
 osa-u.5   4334609   uncharacterized LOC4334609 
 zma-u.5   103644257   rRNA large subunit methyltransferase E 
 vvi-u.5   100247875   uncharacterized LOC100247875 
 ppo-u.5   7489566   uncharacterized LOC7489566 
 mtr-u.5   11442144   ribosomal RNA large subunit methyltransferase E 
 tae-r.2   123126009   ribosomal RNA large subunit methyltransferase E 
 tae-r.2   123117510   ribosomal RNA large subunit methyltransferase E 
 tae-r.2   123108236   ribosomal RNA large subunit methyltransferase E 
 hvu-r.1   123399259   ribosomal RNA large subunit methyltransferase E 
 ghi-r.1   107940400   ribosomal RNA large subunit methyltransferase E 
 ghi-r.1   107955133   ribosomal RNA large subunit methyltransferase E 
 sbi-r.1   8057356   ribosomal RNA large subunit methyltransferase E 
 cit-r.1   102621136   uncharacterized LOC102621136 
 bdi-r.1   100834173   ribosomal RNA large subunit methyltransferase E 
 nta-r.1   107783708   uncharacterized LOC107783708 

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Top 50 coexpressed genes to CHLRE_06g302650v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g302650v5 (cre-r.1 coexpression data)

CoexMap"5716945"


creCHLRE_06g302650v5 | Entrez gene ID : 5716945      
Species cre gma osa zma vvi ppo mtr tae hvu ghi sbi cit bdi nta bra ath bna sly sot
Paralog 1 1 1 1 1 1 1 3 1 2 1 1 1 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0001510 [list] [network] RNA methylation  (59 genes)  IEA  
GO CC
GO MF
GO:0008650 [list] [network] rRNA (uridine-2'-O-)-methyltransferase activity  (2 genes)  IEA  
Protein XP_001691417.2 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  chlo_mito 5,  chlo 3  (predict for XP_001691417.2)
Subcellular
localization
TargetP
mito 8,  other 5  (predict for XP_001691417.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g302650v5
gma-u.5
for
100805818
osa-u.5
for
4334609
zma-u.5
for
103644257
vvi-u.5
for
100247875
ppo-u.5
for
7489566
mtr-u.5
for
11442144
tae-r.2
for
123126009
tae-r.2
for
123117510
tae-r.2
for
123108236
hvu-r.1
for
123399259
ghi-r.1
for
107940400
ghi-r.1
for
107955133
sbi-r.1
for
8057356
cit-r.1
for
102621136
bdi-r.1
for
100834173
nta-r.1
for
107783708


Ortholog ID: 11734
Species cre gma osa zma vvi ppo mtr tae tae tae hvu ghi ghi sbi cit bdi nta
Symbol CHLRE_06g302650v5 LOC100805818 LOC4334609 LOC103644257 LOC100247875 LOC7489566 LOC11442144 LOC123126009 LOC123117510 LOC123108236 LOC123399259 LOC107940400 LOC107955133 LOC8057356 LOC102621136 LOC100834173 LOC107783708
Function* uncharacterized protein ribosomal RNA large subunit methyltransferase E uncharacterized LOC4334609 rRNA large subunit methyltransferase E uncharacterized LOC100247875 uncharacterized LOC7489566 ribosomal RNA large subunit methyltransferase E ribosomal RNA large subunit methyltransferase E ribosomal RNA large subunit methyltransferase E ribosomal RNA large subunit methyltransferase E ribosomal RNA large subunit methyltransferase E ribosomal RNA large subunit methyltransferase E ribosomal RNA large subunit methyltransferase E ribosomal RNA large subunit methyltransferase E uncharacterized LOC102621136 ribosomal RNA large subunit methyltransferase E uncharacterized LOC107783708
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
cre03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 3
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03040 Spliceosome 4
ghi03010 Ribosome 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03040 Spliceosome 4
ghi03010 Ribosome 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 10
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5716945 100805818 4334609 103644257 100247875 7489566 11442144 123126009 123117510 123108236 123399259 107940400 107955133 8057356 102621136 100834173 107783708
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