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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g297750v5   uncharacterized protein 
 ath-u.5   ATO   splicing factor-like protein 
 gma-u.5   100820038   splicing factor SF3a60 homolog 
 gma-u.5   100815393   splicing factor SF3a60 homolog 
 sly-u.5   101254575   splicing factor SF3a60 homolog 
 osa-u.5   4333915   splicing factor SF3a60 homolog 
 zma-u.5   100217051   Splicing factor SF3a60-like protein 
 vvi-u.5   100253705   splicing factor SF3a60 homolog 
 ppo-u.5   7453827   splicing factor SF3a60 homolog 
 ppo-u.5   7489842   splicing factor SF3a60 homolog 
 mtr-u.5   11418483   splicing factor SF3a60 homolog 

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Top 50 coexpressed genes to CHLRE_06g297750v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g297750v5 (cre-r.1 coexpression data)

CoexMap"5717031"


creCHLRE_06g297750v5 | Entrez gene ID : 5717031      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03040 [list] [network] Spliceosome (105 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (103 genes)  IEA  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (105 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042924245.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  nucl_plas 3,  plas 2,  chlo 1,  cyto 1,  mito 1,  pero 1,  cyto_E.R. 1  (predict for XP_042924245.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042924245.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g297750v5

.
ath-u.5
for
ATO

.
gma-u.5
for
100820038

.
gma-u.5
for
100815393

.
sly-u.5
for
101254575

.
osa-u.5
for
4333915

.
zma-u.5
for
100217051

.
vvi-u.5
for
100253705

.
ppo-u.5
for
7453827

.
ppo-u.5
for
7489842

.
mtr-u.5
for
11418483

.


Ortholog ID: 6641
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol ATO LOC100815393 LOC100820038 LOC101254575 LOC4333915 LOC100217051 LOC103855659 LOC103850610 LOC100253705 LOC7489842 LOC7453827 LOC11418483 LOC123078965 LOC123070555 LOC123444123 LOC107891758 LOC107890768 LOC106427709 LOC125581485 CHLRE_06g297750v5 LOC8057452 LOC8068027 LOC102580192 LOC102617436 LOC100837688 LOC107796993 LOC107765278
Function* splicing factor-like protein splicing factor SF3a60 homolog splicing factor SF3a60 homolog splicing factor SF3a60 homolog splicing factor SF3a60 homolog Splicing factor SF3a60-like protein splicing factor SF3a60 homolog splicing factor SF3a60 homolog splicing factor SF3a60 homolog splicing factor SF3a60 homolog splicing factor SF3a60 homolog splicing factor SF3a60 homolog splicing factor SF3a60 homolog splicing factor SF3a60 homolog splicing factor SF3a60 homolog splicing factor SF3a60 homolog splicing factor SF3a60 homolog splicing factor SF3a60 homolog splicing factor SF3a60 homolog uncharacterized protein splicing factor SF3a60 homolog splicing factor SF3a60 homolog splicing factor 3A subunit 3 splicing factor SF3a60 homolog splicing factor SF3a60 homolog splicing factor SF3a60 homolog splicing factor SF3a60 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 11
tae03050 Proteasome 6
tae03013 Nucleocytoplasmic transport 6
tae03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 12
tae03013 Nucleocytoplasmic transport 4
tae03015 mRNA surveillance pathway 4
tae03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu04120 Ubiquitin mediated proteolysis 3
hvu03083 Polycomb repressive complex 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 7
ghi03022 Basal transcription factors 3
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 7
ghi03022 Basal transcription factors 3
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi03040 Spliceosome 2
sbi01230 Biosynthesis of amino acids 2
sbi00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830503 100815393 100820038 101254575 4333915 100217051 103855659 103850610 100253705 7489842 7453827 11418483 123078965 123070555 123444123 107891758 107890768 106427709 125581485 5717031 8057452 8068027 102580192 102617436 100837688 107796993 107765278
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