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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g185250v5   uncharacterized protein 
 cre-r.1   CHLRE_12g521700v5   uncharacterized protein 
 cre-r.1   CHLRE_04g215150v5   uncharacterized protein 
 ath-u.5   SS2   starch synthase 2 
 ath-u.5   SS1   Glycogen/starch synthases, ADP-glucose type 
 gma-u.5   100301883   starch synthase IIa-1 
 gma-u.5   100807354   soluble starch synthase 1, chloroplastic/amyloplastic 
 sly-u.5   101259221   soluble starch synthase 1, chloroplastic/amyloplastic 
 sly-u.5   101252941   granule-bound starch synthase 2, chloroplastic/amyloplastic 
 osa-u.5   4348711   soluble starch synthase 2-1, chloroplastic/amyloplastic-like 
 osa-u.5   4340567   soluble starch synthase 2-3, chloroplastic/amyloplastic-like 
 osa-u.5   4330709   soluble starch synthase 2-2, chloroplastic/amyloplastic-like 
 zma-u.5   541656   starch synthase homolog 1 
 zma-u.5   100136828   starch synthase IIc precursor 
 zma-u.5   100101526   starch synthase IIb-2 precursor 
 bra-r.6   103874297   starch synthase 1, chloroplastic/amyloplastic 
 bra-r.6   103870956   starch synthase 2, chloroplastic/amyloplastic 
 bra-r.6   103842772   starch synthase 2, chloroplastic/amyloplastic 
 vvi-u.5   100261002   granule-bound starch synthase 2, chloroplastic/amyloplastic 
 vvi-u.5   100250417   starch synthase 1, chloroplastic/amyloplastic 
 ppo-u.5   7464543   starch synthase 1, chloroplastic/amyloplastic 
 ppo-u.5   7495978   granule-bound starch synthase 2, chloroplastic/amyloplastic 
 mtr-u.5   11427675   granule-bound starch synthase 2, chloroplastic/amyloplastic 
 mtr-u.5   11421652   soluble starch synthase 1, chloroplastic/amyloplastic 
 tae-r.2   542831   starch synthase 1, chloroplastic/amyloplastic-like 
 tae-r.2   542986   soluble starch synthase 2-3, chloroplastic/amyloplastic 
 tae-r.2   123043677   soluble starch synthase 2-1, chloroplastic/amyloplastic 
 hvu-r.1   123429483   soluble starch synthase 2-1, chloroplastic/amyloplastic-like 
 hvu-r.1   123406939   starch synthase 1, chloroplastic/amyloplastic 
 hvu-r.1   123402618   soluble starch synthase 2-2, chloroplastic/amyloplastic-like 
 ghi-r.1   107930206   starch synthase 1, chloroplastic/amyloplastic 
 ghi-r.1   107937585   starch synthase 1, chloroplastic/amyloplastic 
 ghi-r.1   107938077   starch synthase 1, chloroplastic/amyloplastic 
 bna-r.1   106348268   starch synthase 1, chloroplastic/amyloplastic 
 bna-r.1   125587589   starch synthase 2, chloroplastic/amyloplastic-like 
 bna-r.1   106415281   starch synthase 1, chloroplastic/amyloplastic 
 sbi-r.1   110430978   soluble starch synthase 1, chloroplastic/amyloplastic 
 sbi-r.1   8067363   soluble starch synthase 2-1, chloroplastic/amyloplastic 
 sbi-r.1   8081295   soluble starch synthase 2-3, chloroplastic/amyloplastic 
 sot-r.1   102583115   granule-bound starch synthase 2, chloroplastic/amyloplastic-like 
 sot-r.1   102600045   soluble starch synthase 1, chloroplastic/amyloplastic-like 
 cit-r.1   102630022   starch synthase 1, chloroplastic/amyloplastic 
 cit-r.1   102614846   granule-bound starch synthase 2, chloroplastic/amyloplastic 
 bdi-r.1   100822651   soluble starch synthase 2-2, chloroplastic/amyloplastic 
 bdi-r.1   100834221   soluble starch synthase 2-1, chloroplastic/amyloplastic 
 bdi-r.1   100835372   soluble starch synthase 2-2, chloroplastic/amyloplastic 
 nta-r.1   107811519   soluble starch synthase 1, chloroplastic/amyloplastic 
 nta-r.1   107778346   granule-bound starch synthase 2, chloroplastic/amyloplastic 
 nta-r.1   107812614   granule-bound starch synthase 2, chloroplastic/amyloplastic 

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Top 50 coexpressed genes to CHLRE_03g185250v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g185250v5 (cre-r.1 coexpression data)

CoexMap""


creCHLRE_03g185250v5 | Entrez gene ID : 5717432      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 3 2 2 2 3 3 3 2 2 2 3 3 3 3 3 2 2 3 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
Function uncharacterized protein
KEGG cre00500 [list] [network] Starch and sucrose metabolism (47 genes)
GO BP
GO CC
GO MF
GO:0004373 [list] [network] alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity  (7 genes)  IEA  
Protein XP_042926226.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_042926226.1)
Subcellular
localization
TargetP
chlo 6,  mito 3  (predict for XP_042926226.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g185250v5
cre-r.1
for
CHLRE_12g521700v5
cre-r.1
for
CHLRE_04g215150v5
ath-u.5
for
SS2
ath-u.5
for
SS1
gma-u.5
for
100301883
gma-u.5
for
100807354
sly-u.5
for
101259221
sly-u.5
for
101252941
osa-u.5
for
4348711
osa-u.5
for
4340567
osa-u.5
for
4330709
zma-u.5
for
541656
zma-u.5
for
100136828
zma-u.5
for
100101526
bra-r.6
for
103874297
bra-r.6
for
103870956
bra-r.6
for
103842772
vvi-u.5
for
100261002
vvi-u.5
for
100250417
ppo-u.5
for
7464543
ppo-u.5
for
7495978
mtr-u.5
for
11427675
mtr-u.5
for
11421652
tae-r.2
for
542831
tae-r.2
for
542986
tae-r.2
for
123043677
hvu-r.1
for
123429483
hvu-r.1
for
123406939
hvu-r.1
for
123402618
ghi-r.1
for
107930206
ghi-r.1
for
107937585
ghi-r.1
for
107938077
bna-r.1
for
106348268
bna-r.1
for
125587589
bna-r.1
for
106415281
sbi-r.1
for
110430978
sbi-r.1
for
8067363
sbi-r.1
for
8081295
sot-r.1
for
102583115
sot-r.1
for
102600045
cit-r.1
for
102630022
cit-r.1
for
102614846
bdi-r.1
for
100822651
bdi-r.1
for
100834221
bdi-r.1
for
100835372
nta-r.1
for
107811519
nta-r.1
for
107778346
nta-r.1
for
107812614

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Ortholog ID: 1701
Species cre cre cre ath ath gma gma sly sly osa osa osa zma zma zma bra bra bra vvi vvi ppo ppo mtr mtr tae tae tae hvu hvu hvu ghi ghi ghi bna bna bna sbi sbi sbi sot sot cit cit bdi bdi bdi nta nta nta
Symbol CHLRE_03g185250v5 CHLRE_12g521700v5 CHLRE_04g215150v5 SS2 SS1 LOC100301883 LOC100301884 LOC101259221 LOC101252941 LOC4348711 LOC4340567 LOC4330709 LOC100136828 LOC100101526 LOC542481 LOC103874297 LOC103870956 LOC103842772 LOC100261002 LOC100250417 LOC7464543 LOC7495978 LOC11427675 LOC11421652 LOC542986 LOC123145499 LOC123159571 LOC123429483 LOC123406939 LOC123402618 LOC107937585 LOC107938077 LOC107890446 LOC125587589 LOC106415281 LOC106453257 LOC110430978 LOC8067363 LOC8066439 LOC102583115 LOC102600045 LOC102630022 LOC102614846 LOC100822651 LOC100834221 LOC100835372 LOC107778346 LOC107812614 LOC107780738
Function* uncharacterized protein uncharacterized protein uncharacterized protein starch synthase 2 Glycogen/starch synthases, ADP-glucose type starch synthase IIa-1 starch synthase IIa-2 soluble starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 2, chloroplastic/amyloplastic soluble starch synthase 2-1, chloroplastic/amyloplastic-like soluble starch synthase 2-3, chloroplastic/amyloplastic-like soluble starch synthase 2-2, chloroplastic/amyloplastic-like starch synthase IIc precursor starch synthase IIb-2 precursor soluble starch synthase 2-3, chloroplastic/amyloplastic starch synthase 1, chloroplastic/amyloplastic starch synthase 2, chloroplastic/amyloplastic starch synthase 2, chloroplastic/amyloplastic granule-bound starch synthase 2, chloroplastic/amyloplastic starch synthase 1, chloroplastic/amyloplastic starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 2, chloroplastic/amyloplastic granule-bound starch synthase 2, chloroplastic/amyloplastic soluble starch synthase 1, chloroplastic/amyloplastic soluble starch synthase 2-3, chloroplastic/amyloplastic soluble starch synthase 2-2, chloroplastic/amyloplastic soluble starch synthase 2-3, chloroplastic/amyloplastic soluble starch synthase 2-1, chloroplastic/amyloplastic-like starch synthase 1, chloroplastic/amyloplastic soluble starch synthase 2-2, chloroplastic/amyloplastic-like starch synthase 1, chloroplastic/amyloplastic starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 2, chloroplastic/amyloplastic starch synthase 2, chloroplastic/amyloplastic-like starch synthase 1, chloroplastic/amyloplastic starch synthase 2, chloroplastic/amyloplastic soluble starch synthase 1, chloroplastic/amyloplastic soluble starch synthase 2-1, chloroplastic/amyloplastic soluble starch synthase 2-2, chloroplastic/amyloplastic granule-bound starch synthase 2, chloroplastic/amyloplastic-like soluble starch synthase 1, chloroplastic/amyloplastic-like starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 2, chloroplastic/amyloplastic soluble starch synthase 2-2, chloroplastic/amyloplastic soluble starch synthase 2-1, chloroplastic/amyloplastic soluble starch synthase 2-2, chloroplastic/amyloplastic granule-bound starch synthase 2, chloroplastic/amyloplastic granule-bound starch synthase 2, chloroplastic/amyloplastic soluble starch synthase 1, chloroplastic/amyloplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00592 alpha-Linolenic acid metabolism 2
cre00500 Starch and sucrose metabolism 2
cre00561 Glycerolipid metabolism 2
cre00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00260 Glycine, serine and threonine metabolism 3
cre00630 Glyoxylate and dicarboxylate metabolism 3
cre01200 Carbon metabolism 3
cre00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00061 Fatty acid biosynthesis 2
gma00780 Biotin metabolism 2
gma01212 Fatty acid metabolism 2
gma01240 Biosynthesis of cofactors 2
gma00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 4
sly00460 Cyanoamino acid metabolism 2
sly00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01040 Biosynthesis of unsaturated fatty acids 2
osa01212 Fatty acid metabolism 2
osa03008 Ribosome biogenesis in eukaryotes 2
osa00290 Valine, leucine and isoleucine biosynthesis 2
osa00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 4
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 4
zma00061 Fatty acid biosynthesis 4
zma01212 Fatty acid metabolism 4
zma00620 Pyruvate metabolism 3
zma00780 Biotin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 3
vvi00520 Amino sugar and nucleotide sugar metabolism 2
vvi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00906 Carotenoid biosynthesis 3
vvi00500 Starch and sucrose metabolism 3
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 3
mtr00500 Starch and sucrose metabolism 2
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 9
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae01250 Biosynthesis of nucleotide sugars 3
tae00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 5
tae00908 Zeatin biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 4
hvu00591 Linoleic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
ghi00943 Isoflavonoid biosynthesis 2
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00052 Galactose metabolism 3
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
ghi00905 Brassinosteroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi00760 Nicotinate and nicotinamide metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 9
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
sbi01230 Biosynthesis of amino acids 2
sbi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 9
sbi00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 9
sot00900 Terpenoid backbone biosynthesis 3
sot00520 Amino sugar and nucleotide sugar metabolism 2
sot01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00040 Pentose and glucuronate interconversions 3
sot00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 4
bdi01040 Biosynthesis of unsaturated fatty acids 2
bdi01212 Fatty acid metabolism 2
bdi00196 Photosynthesis - antenna proteins 2
bdi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01040 Biosynthesis of unsaturated fatty acids 2
bdi01212 Fatty acid metabolism 2
bdi00860 Porphyrin metabolism 2
bdi00900 Terpenoid backbone biosynthesis 2
bdi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 6
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01250 Biosynthesis of nucleotide sugars 2
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 6
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00480 Glutathione metabolism 2
nta04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5717432 5722566 5724271 820294 832497 100301883 100301884 101259221 101252941 4348711 4340567 4330709 100136828 100101526 542481 103874297 103870956 103842772 100261002 100250417 7464543 7495978 11427675 11421652 542986 123145499 123159571 123429483 123406939 123402618 107937585 107938077 107890446 125587589 106415281 106453257 110430978 8067363 8066439 102583115 102600045 102630022 102614846 100822651 100834221 100835372 107778346 107812614 107780738
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