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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_07g340750v5   uncharacterized protein 
 ath-u.5   SDN1   small RNA degrading nuclease 1 
 ath-u.5   SDN2   small RNA degrading nuclease 2 
 gma-u.5   100785565   small RNA degrading nuclease 3 
 sly-u.5   101248438   small RNA degrading nuclease 1-like 
 osa-u.5   4337228   small RNA degrading nuclease 1 
 zma-u.5   103645842   small RNA degrading nuclease 1 
 vvi-u.5   100254172   small RNA degrading nuclease 1 
 ppo-u.5   7483093   small RNA degrading nuclease 1 
 mtr-u.5   25485770   small RNA degrading nuclease 1 

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Top 50 coexpressed genes to CHLRE_07g340750v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_07g340750v5 (cre-r.1 coexpression data)

CoexMap"5718102"


creCHLRE_07g340750v5 | Entrez gene ID : 5718102    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0004527 [list] [network] exonuclease activity  (61 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (1484 genes)  IEA  
Protein XP_001692518.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  pero 3,  cyto_nucl 3  (predict for XP_001692518.2)
Subcellular
localization
TargetP
other 7  (predict for XP_001692518.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_07g340750v5

.
ath-u.5
for
SDN1

.
ath-u.5
for
SDN2

.
gma-u.5
for
100785565

.
sly-u.5
for
101248438

.
osa-u.5
for
4337228

.
zma-u.5
for
103645842

.
vvi-u.5
for
100254172

.
ppo-u.5
for
7483093

.
mtr-u.5
for
25485770

.


Ortholog ID: 4405
Species ath gma sly osa zma bra bra vvi ppo mtr tae hvu ghi ghi bna bna cre cre sbi sot cit bdi nta nta
Symbol SDN1 LOC100785565 LOC101248438 LOC4337228 LOC103645842 LOC103829525 LOC103829878 LOC100254172 LOC7483093 LOC25485770 LOC123050356 LOC123428130 LOC107913580 LOC107891333 LOC106346009 LOC106390333 CHLRE_01g036600v5 CHLRE_07g340750v5 LOC8068490 LOC102581137 LOC102628898 LOC100838655 LOC107798545 LOC107789081
Function* small RNA degrading nuclease 1 small RNA degrading nuclease 3 small RNA degrading nuclease 1-like small RNA degrading nuclease 1 small RNA degrading nuclease 1 small RNA degrading nuclease 3 small RNA degrading nuclease 3-like small RNA degrading nuclease 1 small RNA degrading nuclease 1 small RNA degrading nuclease 1 small RNA degrading nuclease 3 small RNA degrading nuclease 1-like small RNA degrading nuclease 1 small RNA degrading nuclease 3 small RNA degrading nuclease 2-like small RNA degrading nuclease 3 uncharacterized protein uncharacterized protein small RNA degrading nuclease 1 small RNA degrading nuclease 1-like small RNA degrading nuclease 3 small RNA degrading nuclease 1 small RNA degrading nuclease 1 small RNA degrading nuclease 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 8
bra03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 5
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 2
ghi00513 Various types of N-glycan biosynthesis 2
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03050 Proteasome 2
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824172 100785565 101248438 4337228 103645842 103829525 103829878 100254172 7483093 25485770 123050356 123428130 107913580 107891333 106346009 106390333 66052100 5718102 8068490 102581137 102628898 100838655 107798545 107789081
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