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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g533750v5   uncharacterized protein 
 ath-u.5   UPL5   ubiquitin protein ligase 5 
 gma-u.5   100796470   E3 ubiquitin-protein ligase UPL5 
 gma-u.5   100789233   E3 ubiquitin-protein ligase UPL5 
 gma-u.5   106796719   E3 ubiquitin-protein ligase UPL5 
 sly-u.5   101250305   E3 ubiquitin-protein ligase UPL5 
 osa-u.5   4347416   E3 ubiquitin-protein ligase UPL5 
 zma-u.5   100279774   uncharacterized LOC100279774 
 zma-u.5   100501539   E3 ubiquitin-protein ligase UPL5 
 bra-r.6   103858640   E3 ubiquitin-protein ligase UPL5 
 bra-r.6   103839878   E3 ubiquitin-protein ligase UPL5 
 vvi-u.5   100244983   E3 ubiquitin-protein ligase UPL5 
 ppo-u.5   7484029   E3 ubiquitin-protein ligase UPL5 
 ppo-u.5   7455828   E3 ubiquitin-protein ligase UPL5 
 ppo-u.5   7463675   E3 ubiquitin-protein ligase UPL5 
 mtr-u.5   11407480   E3 ubiquitin-protein ligase UPL5 
 mtr-u.5   11410735   E3 ubiquitin-protein ligase UPL5 
 tae-r.2   123112382   E3 ubiquitin-protein ligase UPL5 
 tae-r.2   123156754   E3 ubiquitin-protein ligase UPL5 
 tae-r.2   123104149   E3 ubiquitin-protein ligase UPL5 
 hvu-r.1   123399336   E3 ubiquitin-protein ligase UPL5 
 ghi-r.1   107907952   E3 ubiquitin-protein ligase UPL5 
 ghi-r.1   107907409   E3 ubiquitin-protein ligase UPL5 
 ghi-r.1   107905682   E3 ubiquitin-protein ligase UPL5 
 bna-r.1   106381580   E3 ubiquitin-protein ligase UPL5-like 
 bna-r.1   106438772   E3 ubiquitin-protein ligase UPL5 
 bna-r.1   106436285   E3 ubiquitin-protein ligase UPL5 
 sbi-r.1   8055862   E3 ubiquitin-protein ligase UPL5 
 sot-r.1   102582632   E3 ubiquitin-protein ligase UPL5-like 
 sot-r.1   102600294   E3 ubiquitin-protein ligase UPL5-like 
 cit-r.1   102626250   E3 ubiquitin-protein ligase UPL5 
 bdi-r.1   100827199   E3 ubiquitin-protein ligase UPL5 
 bdi-r.1   100826898   E3 ubiquitin-protein ligase UPL5 
 nta-r.1   107827893   E3 ubiquitin-protein ligase UPL5-like 
 nta-r.1   107822672   E3 ubiquitin-protein ligase UPL5 
 nta-r.1   107816895   E3 ubiquitin-protein ligase UPL5-like 

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Top 50 coexpressed genes to CHLRE_12g533750v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g533750v5 (cre-r.1 coexpression data)

CoexMap"5718528"


creCHLRE_12g533750v5 | Entrez gene ID : 5718528      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 3 1 1 2 2 1 3 2 3 1 3 3 1 2 1 2 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045732 [list] [network] positive regulation of protein catabolic process  (21 genes)  IEA  
GO:0000209 [list] [network] protein polyubiquitination  (40 genes)  IEA  
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (98 genes)  IEA  
GO CC
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (132 genes)  IEA  
Protein XP_042918704.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 3,  chlo 2,  cyto 1,  cyto_nucl 1,  pero 1,  cyto_mito 1,  mito_plas 1  (predict for XP_042918704.1)
Subcellular
localization
TargetP
other 5,  chlo 3  (predict for XP_042918704.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g533750v5
ath-u.5
for
UPL5
gma-u.5
for
100796470
gma-u.5
for
100789233
gma-u.5
for
106796719
sly-u.5
for
101250305
osa-u.5
for
4347416
zma-u.5
for
100279774
zma-u.5
for
100501539
bra-r.6
for
103858640
bra-r.6
for
103839878
vvi-u.5
for
100244983
ppo-u.5
for
7484029
ppo-u.5
for
7455828
ppo-u.5
for
7463675
mtr-u.5
for
11407480
mtr-u.5
for
11410735
tae-r.2
for
123112382
tae-r.2
for
123156754
tae-r.2
for
123104149
hvu-r.1
for
123399336
ghi-r.1
for
107907952
ghi-r.1
for
107907409
ghi-r.1
for
107905682
bna-r.1
for
106381580
bna-r.1
for
106438772
bna-r.1
for
106436285
sbi-r.1
for
8055862
sot-r.1
for
102582632
sot-r.1
for
102600294
cit-r.1
for
102626250
bdi-r.1
for
100827199
bdi-r.1
for
100826898
nta-r.1
for
107827893
nta-r.1
for
107822672
nta-r.1
for
107816895


Ortholog ID: 2092
Species cre ath gma gma gma sly osa zma zma bra bra vvi ppo ppo ppo mtr tae tae tae hvu ghi ghi ghi bna bna sbi sot cit bdi bdi nta nta nta
Symbol CHLRE_12g533750v5 UPL5 LOC100796470 LOC106796719 LOC100801584 LOC101250305 LOC4347416 LOC100279774 LOC100501539 LOC103858640 LOC103839878 LOC100244983 LOC7484029 LOC7455828 LOC7463675 LOC11410735 LOC123156754 LOC123104149 LOC123150907 LOC123399336 LOC107907952 LOC107907409 LOC107961932 LOC106381580 LOC106438772 LOC8055862 LOC107058732 LOC102626250 LOC100827199 LOC100826898 LOC107822672 LOC107789421 LOC107777716
Function* uncharacterized protein ubiquitin protein ligase 5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 uncharacterized LOC100279774 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5-like E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5-like E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5-like E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5 E3 ubiquitin-protein ligase UPL5-like E3 ubiquitin-protein ligase UPL5
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 4
cre03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00943 Isoflavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 4
cit00510 N-Glycan biosynthesis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
bdi03008 Ribosome biogenesis in eukaryotes 5
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
nta04142 Lysosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 2
nta03272 Virion - Hepatitis viruses 2
nta04144 Endocytosis 2
nta00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 2
nta03272 Virion - Hepatitis viruses 2
nta04144 Endocytosis 2
nta00513 Various types of N-glycan biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5718528 826870 100796470 106796719 100801584 101250305 4347416 100279774 100501539 103858640 103839878 100244983 7484029 7455828 7463675 11410735 123156754 123104149 123150907 123399336 107907952 107907409 107961932 106381580 106438772 8055862 107058732 102626250 100827199 100826898 107822672 107789421 107777716
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