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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g550700v5   uncharacterized protein 
 ath-u.5   AT1G31220   Formyl transferase 
 gma-u.5   PUR3   glycinamide ribonucleotide transformylase 
 gma-u.5   100784486   phosphoribosylglycinamide formyltransferase, chloroplastic 
 sly-u.5   101252648   phosphoribosylglycinamide formyltransferase, chloroplastic 
 osa-u.5   4345953   phosphoribosylglycinamide formyltransferase, chloroplastic 
 osa-u.5   112939360   phosphoribosylglycinamide formyltransferase, chloroplastic 
 zma-u.5   100272448   Phosphoribosylglycinamide formyltransferase chloroplastic 
 vvi-u.5   100245619   phosphoribosylglycinamide formyltransferase, chloroplastic 
 ppo-u.5   18103829   phosphoribosylglycinamide formyltransferase, chloroplastic 
 mtr-u.5   11431305   phosphoribosylglycinamide formyltransferase, chloroplastic 

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Top 50 coexpressed genes to CHLRE_12g550700v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g550700v5 (cre-r.1 coexpression data)

CoexMap"5719656"


creCHLRE_12g550700v5 | Entrez gene ID : 5719656    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00230 [list] [network] Purine metabolism (64 genes)
cre00670 [list] [network] One carbon pool by folate (19 genes)
GO BP
GO:0006189 [list] [network] 'de novo' IMP biosynthetic process  (8 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (224 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0004644 [list] [network] phosphoribosylglycinamide formyltransferase activity  (1 genes)  IEA  
Protein XP_042919003.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 3  (predict for XP_042919003.1)
Subcellular
localization
TargetP
mito 5,  chlo 5  (predict for XP_042919003.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g550700v5

.
ath-u.5
for
AT1G31220

.
gma-u.5
for
PUR3

.
gma-u.5
for
100784486

.
sly-u.5
for
101252648

.
osa-u.5
for
4345953

.
osa-u.5
for
112939360

.
zma-u.5
for
100272448

.
vvi-u.5
for
100245619

.
ppo-u.5
for
18103829

.
mtr-u.5
for
11431305

.


Ortholog ID: 8269
Species ath gma gma sly osa osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol AT1G31220 LOC100784486 PUR3 LOC101252648 LOC112939360 LOC4345953 LOC100272448 LOC103840262 LOC100245619 LOC18103829 LOC11431305 LOC123069501 LOC123151680 LOC123410286 LOC107961941 LOC107910072 LOC106349175 LOC106366708 CHLRE_12g550700v5 LOC8080300 LOC102577623 LOC102631099 LOC100832826 LOC100841354 LOC107803256 LOC142166170
Function* Formyl transferase phosphoribosylglycinamide formyltransferase, chloroplastic glycinamide ribonucleotide transformylase phosphoribosylglycinamide formyltransferase, chloroplastic phosphoribosylglycinamide formyltransferase, chloroplastic phosphoribosylglycinamide formyltransferase, chloroplastic Phosphoribosylglycinamide formyltransferase chloroplastic phosphoribosylglycinamide formyltransferase, chloroplastic phosphoribosylglycinamide formyltransferase, chloroplastic phosphoribosylglycinamide formyltransferase, chloroplastic phosphoribosylglycinamide formyltransferase, chloroplastic phosphoribosylglycinamide formyltransferase, chloroplastic phosphoribosylglycinamide formyltransferase, chloroplastic phosphoribosylglycinamide formyltransferase, chloroplastic phosphoribosylglycinamide formyltransferase, chloroplastic phosphoribosylglycinamide formyltransferase, chloroplastic phosphoribosylglycinamide formyltransferase, chloroplastic phosphoribosylglycinamide formyltransferase, chloroplastic uncharacterized protein phosphoribosylglycinamide formyltransferase, chloroplastic glycinamide ribonucleotide transformylase phosphoribosylglycinamide formyltransferase, chloroplastic phosphoribosylglycinamide formyltransferase, chloroplastic phosphoribosylglycinamide formyltransferase, chloroplastic phosphoribosylglycinamide formyltransferase, chloroplastic phosphoribosylglycinamide formyltransferase, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00230 Purine metabolism 7
gma01230 Biosynthesis of amino acids 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 5
sly00290 Valine, leucine and isoleucine biosynthesis 3
sly00770 Pantothenate and CoA biosynthesis 2
sly01210 2-Oxocarboxylic acid metabolism 2
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 16
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00670 One carbon pool by folate 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
vvi00230 Purine metabolism 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 4
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 6
tae00670 One carbon pool by folate 6
tae04141 Protein processing in endoplasmic reticulum 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 3
tae00670 One carbon pool by folate 3
tae03015 mRNA surveillance pathway 2
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03040 Spliceosome 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00230 Purine metabolism 2
ghi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03040 Spliceosome 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00230 Purine metabolism 2
ghi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 2
bna00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 2
bna00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00230 Purine metabolism 4
cre00270 Cysteine and methionine metabolism 2
cre01230 Biosynthesis of amino acids 2
cre01240 Biosynthesis of cofactors 2
cre00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
sbi00230 Purine metabolism 3
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi01232 Nucleotide metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 3
bdi00510 N-Glycan biosynthesis 2
bdi00513 Various types of N-glycan biosynthesis 2
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta00670 One carbon pool by folate 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 840010 100784486 548052 101252648 112939360 4345953 100272448 103840262 100245619 18103829 11431305 123069501 123151680 123410286 107961941 107910072 106349175 106366708 5719656 8080300 102577623 102631099 100832826 100841354 107803256 142166170
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