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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_08g375084v5   uncharacterized protein 
 ath-u.5   AT1G60200   splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein 
 gma-u.5   100809428   RNA-binding protein 25 
 gma-u.5   100803051   RNA-binding protein 25 
 sly-u.5   101253282   RNA-binding motif protein 25 
 osa-u.5   4345578   RNA-binding motif protein 25 
 zma-u.5   103653436   RNA-binding protein 25 
 zma-u.5   103643327   RNA-binding protein 25 
 vvi-u.5   100263874   RNA-binding motif protein 25 
 ppo-u.5   18101545   RNA-binding motif protein 25 
 ppo-u.5   7459056   RNA-binding motif protein 25 
 mtr-u.5   11405951   RNA-binding protein 25 

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Top 50 coexpressed genes to CHLRE_08g375084v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_08g375084v5 (cre-r.1 coexpression data)

CoexMap"5719954"


creCHLRE_08g375084v5 | Entrez gene ID : 5719954    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 2 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006397 [list] [network] mRNA processing  (143 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_001694275.2 [sequence] [blastp]
XP_042922153.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  mito 2,  chlo 1  (predict for XP_001694275.2)
nucl 6,  mito 2,  chlo 1  (predict for XP_042922153.1)
Subcellular
localization
TargetP
other 4,  chlo 3  (predict for XP_001694275.2)
other 4,  chlo 3  (predict for XP_042922153.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_08g375084v5

.
ath-u.5
for
AT1G60200

.
gma-u.5
for
100809428

.
gma-u.5
for
100803051

.
sly-u.5
for
101253282

.
osa-u.5
for
4345578

.
zma-u.5
for
103653436

.
zma-u.5
for
103643327

.
vvi-u.5
for
100263874

.
ppo-u.5
for
18101545

.
ppo-u.5
for
7459056

.
mtr-u.5
for
11405951

.


Ortholog ID: 8287
Species ath gma gma sly osa zma zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G60200 LOC100809428 LOC100803051 LOC101253282 LOC4345578 LOC103653436 LOC103643327 LOC103829743 LOC100263874 LOC18101545 LOC7459056 LOC11405951 LOC123162187 LOC123154525 LOC123412430 LOC107886664 LOC107909631 LOC125575168 LOC106396500 CHLRE_08g375084v5 LOC8075609 LOC102598264 LOC102609677 LOC100842258 LOC107763094 LOC107767286
Function* splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein RNA-binding protein 25 RNA-binding protein 25 RNA-binding motif protein 25 RNA-binding motif protein 25 RNA-binding protein 25 RNA-binding protein 25 RNA-binding protein 25 RNA-binding motif protein 25 RNA-binding motif protein 25 RNA-binding motif protein 25 RNA-binding protein 25 RNA-binding protein 25 RNA-binding protein 25 RNA-binding protein 25 RNA-binding protein 25 RNA-binding protein 25 RNA-binding protein 25-like RNA-binding protein 25 uncharacterized protein RNA-binding protein 25 RNA-binding protein 25 RNA-binding motif protein 25 RNA-binding protein 25 RNA-binding motif protein 25 RNA-binding motif protein 25
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 8
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 8
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842315 100809428 100803051 101253282 4345578 103653436 103643327 103829743 100263874 18101545 7459056 11405951 123162187 123154525 123412430 107886664 107909631 125575168 106396500 5719954 8075609 102598264 102609677 100842258 107763094 107767286
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