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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_09g394750v5   uncharacterized protein 
 ath-u.5   RPS1   ribosomal protein S1 
 gma-u.5   100812847   30S ribosomal protein S1, chloroplastic-like 
 gma-u.5   100810511   30S ribosomal protein S1 
 gma-u.5   100806905   30S ribosomal protein S1 
 sly-u.5   101245144   30S ribosomal protein S1 
 sly-u.5   101247851   small ribosomal subunit protein bS1c 
 osa-u.5   4332652   small ribosomal subunit protein bS1c 
 zma-u.5   100283777   30S ribosomal protein S1,chloroplastic-like 
 vvi-u.5   100265325   small ribosomal subunit protein bS1c 
 ppo-u.5   7485852   30S ribosomal protein S1, chloroplastic 
 ppo-u.5   7498235   30S ribosomal protein S1, chloroplastic 
 mtr-u.5   11410196   30S ribosomal protein S1, chloroplastic 

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Top 50 coexpressed genes to CHLRE_09g394750v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_09g394750v5 (cre-r.1 coexpression data)

CoexMap"5720139"


creCHLRE_09g394750v5 | Entrez gene ID : 5720139      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 3 2 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03010 [list] [network] Ribosome (149 genes)
GO BP
GO:0006412 [list] [network] translation  (268 genes)  IEA  
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (109 genes)  IEA  
GO:0003735 [list] [network] structural constituent of ribosome  (164 genes)  IEA  
Protein XP_001694485.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 5,  chlo_mito 5  (predict for XP_001694485.1)
Subcellular
localization
TargetP
mito 9,  chlo 5  (predict for XP_001694485.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_09g394750v5

.
ath-u.5
for
RPS1

.
gma-u.5
for
100812847

.
gma-u.5
for
100810511

.
gma-u.5
for
100806905

.
sly-u.5
for
101245144

.
sly-u.5
for
101247851

.
osa-u.5
for
4332652

.
zma-u.5
for
100283777

.
vvi-u.5
for
100265325

.
ppo-u.5
for
7485852

.
ppo-u.5
for
7498235

.
mtr-u.5
for
11410196

.


Ortholog ID: 6981
Species ath gma gma sly sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol RPS1 LOC100810511 LOC100812847 LOC101247851 LOC101245144 LOC4332652 LOC100283777 LOC103874603 LOC103837311 LOC100265325 LOC7485852 LOC7498235 LOC11410196 LOC123097643 LOC123092307 LOC123448789 LOC107910559 LOC107951587 LOC111211543 LOC106348859 CHLRE_09g394750v5 LOC8081054 LOC102588477 LOC102588822 LOC102629225 LOC100823611 LOC107808631 LOC107800017
Function* ribosomal protein S1 30S ribosomal protein S1 30S ribosomal protein S1, chloroplastic-like small ribosomal subunit protein bS1c 30S ribosomal protein S1 small ribosomal subunit protein bS1c 30S ribosomal protein S1,chloroplastic-like 30S ribosomal protein S1, chloroplastic 30S ribosomal protein S1, chloroplastic small ribosomal subunit protein bS1c 30S ribosomal protein S1, chloroplastic 30S ribosomal protein S1, chloroplastic 30S ribosomal protein S1, chloroplastic 30S ribosomal protein S1, chloroplastic 30S ribosomal protein S1, chloroplastic 30S ribosomal protein S1, chloroplastic 30S ribosomal protein S1, chloroplastic 30S ribosomal protein S1, chloroplastic 30S ribosomal protein S1, chloroplastic 30S ribosomal protein S1, chloroplastic-like uncharacterized protein 30S ribosomal protein S1, chloroplastic 30S ribosomal protein S1, chloroplastic-like 30S ribosomal protein S1, chloroplastic-like 30S ribosomal protein S1, chloroplastic 30S ribosomal protein S1, chloroplastic small ribosomal subunit protein bS1c small ribosomal subunit protein bS1c
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 3
gma01240 Biosynthesis of cofactors 3
gma03060 Protein export 3
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 11
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 9
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 15
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00710 Carbon fixation by Calvin cycle 6
vvi01200 Carbon metabolism 6
vvi00190 Oxidative phosphorylation 2
vvi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 4
ppo03010 Ribosome 3
ppo00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 9
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 6
hvu03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi00053 Ascorbate and aldarate metabolism 2
ghi00480 Glutathione metabolism 2
ghi03060 Protein export 2
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi00260 Glycine, serine and threonine metabolism 3
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
ghi01230 Biosynthesis of amino acids 3
ghi00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
bna00620 Pyruvate metabolism 2
bna00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 9
cre00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
sot01240 Biosynthesis of cofactors 3
sot00061 Fatty acid biosynthesis 2
sot01212 Fatty acid metabolism 2
sot00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 11
sot01200 Carbon metabolism 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 12
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
nta00860 Porphyrin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 833138 100810511 100812847 101247851 101245144 4332652 100283777 103874603 103837311 100265325 7485852 7498235 11410196 123097643 123092307 123448789 107910559 107951587 111211543 106348859 5720139 8081054 102588477 102588822 102629225 100823611 107808631 107800017
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