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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_09g390430v5   uncharacterized protein 
 ath-u.5   DDL   SMAD/FHA domain-containing protein 
 gma-u.5   100812104   FHA domain-containing protein DDL 
 gma-u.5   100780414   FHA domain-containing protein DDL 
 sly-u.5   101248430   FHA domain-containing protein 
 osa-u.5   4339499   FHA domain-containing protein DDL 
 zma-u.5   100192588   uncharacterized LOC100192588 
 vvi-u.5   100267032   FHA domain-containing protein DDL 
 ppo-u.5   18095934   FHA domain-containing protein DDL 
 ppo-u.5   7454424   FHA domain-containing protein DDL 
 mtr-u.5   11441498   FHA domain-containing protein DDL 
 mtr-u.5   11406068   FHA domain-containing protein DDL 

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Top 50 coexpressed genes to CHLRE_09g390430v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_09g390430v5 (cre-r.1 coexpression data)

CoexMap"5720635"


creCHLRE_09g390430v5 | Entrez gene ID : 5720635    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03040 [list] [network] Spliceosome (105 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (109 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042921137.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for XP_042921137.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042921137.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_09g390430v5

.
ath-u.5
for
DDL

.
gma-u.5
for
100812104

.
gma-u.5
for
100780414

.
sly-u.5
for
101248430

.
osa-u.5
for
4339499

.
zma-u.5
for
100192588

.
vvi-u.5
for
100267032

.
ppo-u.5
for
18095934

.
ppo-u.5
for
7454424

.
mtr-u.5
for
11441498

.
mtr-u.5
for
11406068

.


Ortholog ID: 8475
Species ath gma gma sly osa zma bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol DDL LOC100812104 LOC100780414 LOC101248430 LOC4339499 LOC100192588 LOC103859863 LOC100267032 LOC18095934 LOC7454424 LOC11441498 LOC11406068 LOC123146253 LOC123139978 LOC123401608 LOC107893531 LOC107920563 LOC106389277 LOC106424448 CHLRE_09g390430v5 LOC8083760 LOC102589137 LOC102613644 LOC100836499 LOC107781120 LOC107783579
Function* SMAD/FHA domain-containing protein FHA domain-containing protein DDL FHA domain-containing protein DDL FHA domain-containing protein FHA domain-containing protein DDL uncharacterized LOC100192588 FHA domain-containing protein DDL FHA domain-containing protein DDL FHA domain-containing protein DDL FHA domain-containing protein DDL FHA domain-containing protein DDL FHA domain-containing protein DDL FHA domain-containing protein DDL FHA domain-containing protein DDL FHA domain-containing protein DDL FHA domain-containing protein DDL FHA domain-containing protein DDL FHA domain-containing protein DDL FHA domain-containing protein DDL uncharacterized protein FHA domain-containing protein DDL FHA domain-containing protein DDL FHA domain-containing protein DDL FHA domain-containing protein DDL uncharacterized LOC107781120 uncharacterized LOC107783579
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
gma03010 Ribosome 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 3
gma00543 Exopolysaccharide biosynthesis 3
gma00920 Sulfur metabolism 3
gma01200 Carbon metabolism 3
gma01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03250 Viral life cycle - HIV-1 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr01240 Biosynthesis of cofactors 3
mtr03040 Spliceosome 3
mtr00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 7
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 3
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03013 Nucleocytoplasmic transport 2
bdi00514 Other types of O-glycan biosynthesis 2
bdi03022 Basal transcription factors 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta04120 Ubiquitin mediated proteolysis 2
nta03082 ATP-dependent chromatin remodeling 2
nta04075 Plant hormone signal transduction 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03040 Spliceosome 4
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821601 100812104 100780414 101248430 4339499 100192588 103859863 100267032 18095934 7454424 11441498 11406068 123146253 123139978 123401608 107893531 107920563 106389277 106424448 5720635 8083760 102589137 102613644 100836499 107781120 107783579
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