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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g150650v5   uncharacterized protein 
 ath-u.5   AT5G58020   RTF2 RING-finger protein 
 gma-u.5   100790159   replication termination factor 2 
 gma-u.5   100779501   replication termination factor 2 
 sly-u.5   101261532   uncharacterized LOC101261532 
 osa-u.5   4340324   uncharacterized LOC4340324 
 zma-u.5   103637974   replication termination factor 2 
 vvi-u.5   100243282   uncharacterized LOC100243282 
 ppo-u.5   7485230   uncharacterized LOC7485230 
 ppo-u.5   7493405   uncharacterized LOC7493405 
 mtr-u.5   11427118   replication termination factor 2 

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Top 50 coexpressed genes to CHLRE_03g150650v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g150650v5 (cre-r.1 coexpression data)

CoexMap"5721149"


creCHLRE_03g150650v5 | Entrez gene ID : 5721149      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0071171 [list] [network] site-specific DNA replication termination at RTS1 barrier  (2 genes)  IEA  
GO:1902979 [list] [network] mitotic DNA replication termination  (2 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_001695672.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  extr 4,  cyto 1,  mito 1  (predict for XP_001695672.2)
Subcellular
localization
TargetP
mito 3,  other 3  (predict for XP_001695672.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g150650v5

.
ath-u.5
for
AT5G58020

.
gma-u.5
for
100790159

.
gma-u.5
for
100779501

.
sly-u.5
for
101261532

.
osa-u.5
for
4340324

.
zma-u.5
for
103637974

.
vvi-u.5
for
100243282

.
ppo-u.5
for
7485230

.
ppo-u.5
for
7493405

.
mtr-u.5
for
11427118

.


Ortholog ID: 8205
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT5G58020 LOC100790159 LOC100779501 LOC101261532 LOC4340324 LOC103637974 LOC103845240 LOC103851666 LOC100243282 LOC7493405 LOC7485230 LOC11427118 LOC123166049 LOC123155648 LOC123407660 LOC107931409 LOC107888434 LOC106426067 LOC106388455 CHLRE_03g150650v5 LOC8065413 LOC107059939 LOC107176482 LOC100827559 LOC107823415 LOC107814563
Function* RTF2 RING-finger protein replication termination factor 2 replication termination factor 2 uncharacterized LOC101261532 uncharacterized LOC4340324 replication termination factor 2 replication termination factor 2 replication termination factor 2 uncharacterized LOC100243282 uncharacterized LOC7493405 uncharacterized LOC7485230 replication termination factor 2 replication termination factor 2 replication termination factor 2 replication termination factor 2 replication termination factor 2 replication termination factor 2 replication termination factor 2-like replication termination factor 2-like uncharacterized protein protein RTF2 homolog protein RTF2 homolog uncharacterized LOC107176482 protein RTF2 homolog uncharacterized LOC107823415 uncharacterized LOC107814563
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 6
ath03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bra01240 Biosynthesis of cofactors 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 3
tae01240 Biosynthesis of cofactors 3
tae04122 Sulfur relay system 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 3
ghi03272 Virion - Hepatitis viruses 3
ghi04144 Endocytosis 3
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 2
nta03272 Virion - Hepatitis viruses 2
nta04144 Endocytosis 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 2
nta03272 Virion - Hepatitis viruses 2
nta04144 Endocytosis 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835914 100790159 100779501 101261532 4340324 103637974 103845240 103851666 100243282 7493405 7485230 11427118 123166049 123155648 123407660 107931409 107888434 106426067 106388455 5721149 8065413 107059939 107176482 100827559 107823415 107814563
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