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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g148950v5   uncharacterized protein 
 ath-u.5   AT3G23700   Nucleic acid-binding proteins superfamily 
 gma-u.5   100798303   30S ribosomal protein S1 
 gma-u.5   100786308   30S ribosomal protein S1 homolog 
 sly-u.5   101267163   uncharacterized LOC101267163 
 osa-u.5   4334761   uncharacterized LOC4334761 
 zma-u.5   100284950   30S ribosomal protein S1, chloroplastic-like 
 bra-r.6   103828714   30S ribosomal protein S1 homolog B 
 vvi-u.5   100244532   uncharacterized LOC100244532 
 ppo-u.5   7462028   uncharacterized LOC7462028 
 mtr-u.5   11446401   30S ribosomal protein S1 homolog 
 tae-r.2   123115042   uncharacterized LOC123115042 
 tae-r.2   123114285   4-hydroxy-3-methylbut-2-enyl diphosphate reductase 
 tae-r.2   123087650   4-hydroxy-3-methylbut-2-enyl diphosphate reductase 
 hvu-r.1   123395064   30S ribosomal protein S1 homolog B 
 ghi-r.1   107927328   30S ribosomal protein S1 
 ghi-r.1   107934850   30S ribosomal protein S1 
 bna-r.1   106357863   30S ribosomal protein S1-like 
 bna-r.1   106381805   30S ribosomal protein S1 
 sbi-r.1   8060886   30S ribosomal protein S1, chloroplastic 
 sot-r.1   102601873   30S ribosomal protein S1 
 cit-r.1   102616265   uncharacterized LOC102616265 
 bdi-r.1   100833526   30S ribosomal protein S1 
 nta-r.1   107831599   uncharacterized LOC107831599 
 nta-r.1   107761621   uncharacterized LOC107761621 
 nta-r.1   142169196   uncharacterized LOC142169196 

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Top 50 coexpressed genes to CHLRE_03g148950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g148950v5 (cre-r.1 coexpression data)

CoexMap"5721178"


creCHLRE_03g148950v5 | Entrez gene ID : 5721178      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 1 1 1 1 3 1 2 2 1 1 1 1 3
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003676 [list] [network] nucleic acid binding  (1484 genes)  IEA  
Protein XP_001695686.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 4  (predict for XP_001695686.1)
Subcellular
localization
TargetP
mito 6,  chlo 4  (predict for XP_001695686.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g148950v5
ath-u.5
for
AT3G23700
gma-u.5
for
100798303
gma-u.5
for
100786308
sly-u.5
for
101267163
osa-u.5
for
4334761
zma-u.5
for
100284950
bra-r.6
for
103828714
vvi-u.5
for
100244532
ppo-u.5
for
7462028
mtr-u.5
for
11446401
tae-r.2
for
123115042
tae-r.2
for
123114285
tae-r.2
for
123087650
hvu-r.1
for
123395064
ghi-r.1
for
107927328
ghi-r.1
for
107934850
bna-r.1
for
106357863
bna-r.1
for
106381805
sbi-r.1
for
8060886
sot-r.1
for
102601873
cit-r.1
for
102616265
bdi-r.1
for
100833526
nta-r.1
for
107831599
nta-r.1
for
107761621
nta-r.1
for
142169196


Ortholog ID: 8480
Species cre ath gma gma sly osa zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta nta
Symbol CHLRE_03g148950v5 AT3G23700 LOC100798303 LOC100786308 LOC101267163 LOC4334761 LOC100284950 LOC103828714 LOC100244532 LOC7462028 LOC11446401 LOC123115042 LOC123114285 LOC123087650 LOC123395064 LOC107927328 LOC107934850 LOC106357863 LOC106381805 LOC8060886 LOC102601873 LOC102616265 LOC100833526 LOC107831599 LOC107761621 LOC142169196
Function* uncharacterized protein Nucleic acid-binding proteins superfamily 30S ribosomal protein S1 30S ribosomal protein S1 homolog uncharacterized LOC101267163 uncharacterized LOC4334761 30S ribosomal protein S1, chloroplastic-like 30S ribosomal protein S1 homolog B uncharacterized LOC100244532 uncharacterized LOC7462028 30S ribosomal protein S1 homolog uncharacterized LOC123115042 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 30S ribosomal protein S1 homolog B 30S ribosomal protein S1 30S ribosomal protein S1 30S ribosomal protein S1-like 30S ribosomal protein S1 30S ribosomal protein S1, chloroplastic 30S ribosomal protein S1 uncharacterized LOC102616265 30S ribosomal protein S1 uncharacterized LOC107831599 uncharacterized LOC107761621 uncharacterized LOC142169196
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 9
gma00710 Carbon fixation by Calvin cycle 6
gma00630 Glyoxylate and dicarboxylate metabolism 3
gma00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 8
osa00710 Carbon fixation by Calvin cycle 7
osa00630 Glyoxylate and dicarboxylate metabolism 3
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 5
zma01240 Biosynthesis of cofactors 2
zma00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00260 Glycine, serine and threonine metabolism 2
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 8
ppo00710 Carbon fixation by Calvin cycle 5
ppo00010 Glycolysis / Gluconeogenesis 3
ppo00030 Pentose phosphate pathway 3
ppo00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 6
tae01200 Carbon metabolism 6
tae00630 Glyoxylate and dicarboxylate metabolism 5
tae00020 Citrate cycle (TCA cycle) 3
tae00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 2
sot00195 Photosynthesis 2
sot00710 Carbon fixation by Calvin cycle 2
sot01200 Carbon metabolism 2
sot01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5721178 821951 100798303 100786308 101267163 4334761 100284950 103828714 100244532 7462028 11446401 123115042 123114285 123087650 123395064 107927328 107934850 106357863 106381805 8060886 102601873 102616265 100833526 107831599 107761621 142169196
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