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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7462028   uncharacterized LOC7462028 
 ppo-r.4   7462028   uncharacterized LOC7462028 
 ppo-m.4   7462028   uncharacterized LOC7462028 
 gma-u.5   100798303   30S ribosomal protein S1 
 gma-u.5   100786308   30S ribosomal protein S1 homolog 
 mtr-u.5   11446401   30S ribosomal protein S1 homolog 
 ath-u.5   AT3G23700   Nucleic acid-binding proteins superfamily 
 vvi-u.5   100244532   uncharacterized LOC100244532 
 sly-u.5   101267163   uncharacterized LOC101267163 
 osa-u.5   4334761   uncharacterized LOC4334761 
 zma-u.5   100284950   30S ribosomal protein S1, chloroplastic-like 

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Top 50 coexpressed genes to 7462028 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7462028 (ppo-u.5 coexpression data)

CoexMap"7462028"


ppoLOC7462028 | Entrez gene ID : 7462028    
Species ppo gma mtr ath vvi sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003676 [list] [network] nucleic acid binding  (4002 genes)  IEA  
Protein XP_024440383.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 2,  vacu 2  (predict for XP_024440383.2)
Subcellular
localization
TargetP
chlo 3  (predict for XP_024440383.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7462028

.
ppo-r.4
for
7462028

.
ppo-m.4
for
7462028

.
gma-u.5
for
100798303

.
gma-u.5
for
100786308

.
mtr-u.5
for
11446401

.
ath-u.5
for
AT3G23700

.
vvi-u.5
for
100244532

.
sly-u.5
for
101267163

.
osa-u.5
for
4334761

.
zma-u.5
for
100284950

.


Ortholog ID: 8480
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT3G23700 LOC100798303 LOC100786308 LOC101267163 LOC4334761 LOC100284950 LOC103828714 LOC100244532 LOC7462028 LOC11446401 LOC123087650 LOC123115042 LOC123395064 LOC107927328 LOC107934850 LOC106357863 LOC106381805 CHLRE_03g148950v5 LOC8060886 LOC102601873 LOC102616265 LOC100833526 LOC107831599 LOC142169196
Function* Nucleic acid-binding proteins superfamily 30S ribosomal protein S1 30S ribosomal protein S1 homolog uncharacterized LOC101267163 uncharacterized LOC4334761 30S ribosomal protein S1, chloroplastic-like 30S ribosomal protein S1 homolog B uncharacterized LOC100244532 uncharacterized LOC7462028 30S ribosomal protein S1 homolog 4-hydroxy-3-methylbut-2-enyl diphosphate reductase uncharacterized LOC123115042 30S ribosomal protein S1 homolog B 30S ribosomal protein S1 30S ribosomal protein S1 30S ribosomal protein S1-like 30S ribosomal protein S1 uncharacterized protein 30S ribosomal protein S1, chloroplastic 30S ribosomal protein S1 uncharacterized LOC102616265 30S ribosomal protein S1 uncharacterized LOC107831599 uncharacterized LOC142169196
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 9
gma00710 Carbon fixation by Calvin cycle 6
gma00630 Glyoxylate and dicarboxylate metabolism 3
gma00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 8
osa00710 Carbon fixation by Calvin cycle 7
osa00630 Glyoxylate and dicarboxylate metabolism 3
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 5
zma01240 Biosynthesis of cofactors 2
zma00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00260 Glycine, serine and threonine metabolism 2
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 8
ppo00710 Carbon fixation by Calvin cycle 5
ppo00010 Glycolysis / Gluconeogenesis 3
ppo00030 Pentose phosphate pathway 3
ppo00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 6
tae01200 Carbon metabolism 6
tae00630 Glyoxylate and dicarboxylate metabolism 5
tae00020 Citrate cycle (TCA cycle) 3
tae00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 2
sot00195 Photosynthesis 2
sot00710 Carbon fixation by Calvin cycle 2
sot01200 Carbon metabolism 2
sot01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821951 100798303 100786308 101267163 4334761 100284950 103828714 100244532 7462028 11446401 123087650 123115042 123395064 107927328 107934850 106357863 106381805 5721178 8060886 102601873 102616265 100833526 107831599 142169196
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