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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g145967v5   uncharacterized protein 
 ath-u.5   AT2G40660   Nucleic acid-binding, OB-fold-like protein 
 gma-u.5   102661431   nuclear transcription factor Y subunit B-2 
 gma-u.5   100809851   probable methionyl-tRNA synthetase-like 
 gma-u.5   100779769   aminoacyl tRNA synthase complex-interacting multifunctional protein 1 
 sly-u.5   101248684   uncharacterized LOC101248684 
 osa-u.5   4327613   uncharacterized LOC4327613 
 zma-u.5   100282083   uncharacterized LOC100282083 
 vvi-u.5   100251895   uncharacterized LOC100251895 
 ppo-u.5   7455238   uncharacterized LOC7455238 
 mtr-u.5   25489821   aminoacyl tRNA synthase complex-interacting multifunctional protein 1 

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Top 50 coexpressed genes to CHLRE_03g145967v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g145967v5 (cre-r.1 coexpression data)

CoexMap"5721238"


creCHLRE_03g145967v5 | Entrez gene ID : 5721238    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 3 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0000049 [list] [network] tRNA binding  (34 genes)  IEA  
Protein XP_042925567.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  cyto 1,  cyto_nucl 1  (predict for XP_042925567.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_042925567.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g145967v5

.
ath-u.5
for
AT2G40660

.
gma-u.5
for
102661431

.
gma-u.5
for
100809851

.
gma-u.5
for
100779769

.
sly-u.5
for
101248684

.
osa-u.5
for
4327613

.
zma-u.5
for
100282083

.
vvi-u.5
for
100251895

.
ppo-u.5
for
7455238

.
mtr-u.5
for
25489821

.


Ortholog ID: 9428
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT2G40660 LOC102661431 LOC100809851 LOC101248684 LOC4327613 LOC100282083 LOC103866513 LOC100251895 LOC7455238 LOC25489821 LOC123079581 LOC123062442 LOC123444722 LOC107916292 LOC121222464 LOC106450692 LOC106396792 CHLRE_03g145967v5 LOC110434199 LOC102591263 LOC102610619 LOC100837985 LOC107818565 LOC107759049
Function* Nucleic acid-binding, OB-fold-like protein nuclear transcription factor Y subunit B-2 probable methionyl-tRNA synthetase-like uncharacterized LOC101248684 uncharacterized LOC4327613 uncharacterized LOC100282083 tRNA-aminoacylation cofactor arc1 uncharacterized LOC100251895 uncharacterized LOC7455238 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 methionine--tRNA ligase, cytoplasmic methionine--tRNA ligase, cytoplasmic methionine--tRNA ligase, cytoplasmic aminoacyl tRNA synthase complex-interacting multifunctional protein 1 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 tRNA-aminoacylation cofactor arc1 uncharacterized protein aminoacyl tRNA synthase complex-interacting multifunctional protein 1 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 uncharacterized LOC102610619 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 uncharacterized LOC107818565 uncharacterized LOC107759049
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 3
sly03013 Nucleocytoplasmic transport 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 4
ppo00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 13
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi00261 Monobactam biosynthesis 2
ghi00300 Lysine biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 3
cre03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot00230 Purine metabolism 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 6
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818661 102661431 100809851 101248684 4327613 100282083 103866513 100251895 7455238 25489821 123079581 123062442 123444722 107916292 121222464 106450692 106396792 5721238 110434199 102591263 102610619 100837985 107818565 107759049
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