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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g679600v5   uncharacterized protein 
 ath-u.5   U2A'   U2 small nuclear ribonucleoprotein A 
 gma-u.5   100803110   U2 small nuclear ribonucleoprotein A'-like 
 gma-u.5   100779162   U2 small nuclear ribonucleoprotein A'-like 
 sly-u.5   101248760   U2 small nuclear ribonucleoprotein A' 
 osa-u.5   4328823   U2 small nuclear ribonucleoprotein A' 
 zma-u.5   100273115   uncharacterized LOC100273115 
 vvi-u.5   100264276   U2 small nuclear ribonucleoprotein A' 
 ppo-u.5   7477768   U2 small nuclear ribonucleoprotein A' 
 mtr-u.5   25495091   U2 small nuclear ribonucleoprotein A' 

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Top 50 coexpressed genes to CHLRE_16g679600v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g679600v5 (cre-r.1 coexpression data)

CoexMap"5721540"


creCHLRE_16g679600v5 | Entrez gene ID : 5721540      
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03040 [list] [network] Spliceosome (105 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (103 genes)  IEA  
GO CC
GO MF
GO:0030620 [list] [network] U2 snRNA binding  (5 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042916035.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo 3,  cyto 3  (predict for XP_042916035.1)
Subcellular
localization
TargetP
mito 8,  other 5  (predict for XP_042916035.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g679600v5

.
ath-u.5
for
U2A'

.
gma-u.5
for
100803110

.
gma-u.5
for
100779162

.
sly-u.5
for
101248760

.
osa-u.5
for
4328823

.
zma-u.5
for
100273115

.
vvi-u.5
for
100264276

.
ppo-u.5
for
7477768

.
mtr-u.5
for
25495091

.


Ortholog ID: 6397
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol U2A' LOC100803110 LOC100779162 LOC101248760 LOC4328823 LOC100273115 LOC103843334 LOC103871750 LOC100264276 LOC7477768 LOC25495091 LOC123114359 LOC123114360 LOC123395148 LOC107896860 LOC107914486 LOC106346251 LOC106362379 CHLRE_16g679600v5 LOC8061406 LOC102597690 LOC102619436 LOC100839483 LOC107778732 LOC107774413
Function* U2 small nuclear ribonucleoprotein A U2 small nuclear ribonucleoprotein A'-like U2 small nuclear ribonucleoprotein A'-like U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' uncharacterized LOC100273115 U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A'-like U2 small nuclear ribonucleoprotein A'-like U2 small nuclear ribonucleoprotein A' uncharacterized protein U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A'-like U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A'
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 10
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
gma03040 Spliceosome 3
gma00230 Purine metabolism 2
gma00240 Pyrimidine metabolism 2
gma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma03010 Ribosome 3
gma03040 Spliceosome 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
sly03050 Proteasome 2
sly03420 Nucleotide excision repair 2
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
osa03015 mRNA surveillance pathway 3
osa03013 Nucleocytoplasmic transport 2
osa03082 ATP-dependent chromatin remodeling 2
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi03040 Spliceosome 2
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 9
ghi03040 Spliceosome 2
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 12
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03020 RNA polymerase 2
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 11
cit03040 Spliceosome 2
cit00510 N-Glycan biosynthesis 2
cit00513 Various types of N-glycan biosynthesis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta04626 Plant-pathogen interaction 4
nta03018 RNA degradation 2
nta03010 Ribosome 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta04626 Plant-pathogen interaction 4
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837505 100803110 100779162 101248760 4328823 100273115 103843334 103871750 100264276 7477768 25495091 123114359 123114360 123395148 107896860 107914486 106346251 106362379 5721540 8061406 102597690 102619436 100839483 107778732 107774413
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