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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   U2A'   U2 small nuclear ribonucleoprotein A 
 ath-r.7   U2A'   U2 small nuclear ribonucleoprotein A 
 ath-m.9   U2A'   U2 small nuclear ribonucleoprotein A 
 ath-e.2   U2A'   U2 small nuclear ribonucleoprotein A 
 ath-m.4.bio   U2A'   U2 small nuclear ribonucleoprotein A 
 ath-m.4.hor   U2A'   U2 small nuclear ribonucleoprotein A 
 ath-m.4.lig   U2A'   U2 small nuclear ribonucleoprotein A 
 ath-m.4.str   U2A'   U2 small nuclear ribonucleoprotein A 
 ath-m.4.tis   U2A'   U2 small nuclear ribonucleoprotein A 
 bra-r.6   103871750   U2 small nuclear ribonucleoprotein A' 
 bra-r.6   103843334   U2 small nuclear ribonucleoprotein A' 
 bra-r.6   103836312   U2 small nuclear ribonucleoprotein A' 
 bna-r.1   106362379   U2 small nuclear ribonucleoprotein A' 
 bna-r.1   106453136   U2 small nuclear ribonucleoprotein A'-like 
 bna-r.1   106419862   U2 small nuclear ribonucleoprotein A'-like 
 ghi-r.1   107896860   U2 small nuclear ribonucleoprotein A' 
 ghi-r.1   107914486   U2 small nuclear ribonucleoprotein A'-like 
 cit-r.1   102619436   U2 small nuclear ribonucleoprotein A' 
 gma-u.5   100803110   U2 small nuclear ribonucleoprotein A'-like 
 gma-u.5   100779162   U2 small nuclear ribonucleoprotein A'-like 
 vvi-u.5   100264276   U2 small nuclear ribonucleoprotein A' 
 ppo-u.5   7477768   U2 small nuclear ribonucleoprotein A' 
 mtr-u.5   25495091   U2 small nuclear ribonucleoprotein A' 
 sly-u.5   101248760   U2 small nuclear ribonucleoprotein A' 
 sot-r.1   102597690   U2 small nuclear ribonucleoprotein A'-like 
 nta-r.1   107778732   U2 small nuclear ribonucleoprotein A' 
 nta-r.1   107774413   U2 small nuclear ribonucleoprotein A' 
 osa-u.5   4328823   U2 small nuclear ribonucleoprotein A' 
 zma-u.5   100273115   uncharacterized LOC100273115 
 tae-r.2   123087567   U2 small nuclear ribonucleoprotein A' 
 tae-r.2   123114359   U2 small nuclear ribonucleoprotein A' 
 tae-r.2   123114360   U2 small nuclear ribonucleoprotein A' 
 hvu-r.1   123395148   U2 small nuclear ribonucleoprotein A' 
 sbi-r.1   8061406   U2 small nuclear ribonucleoprotein A' 
 bdi-r.1   100839483   U2 small nuclear ribonucleoprotein A' 
 cre-r.1   CHLRE_16g679600v5   uncharacterized protein 

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Top 50 coexpressed genes to U2A' (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to U2A' (ath-u.5 coexpression data)

CoexMap"837505"


athU2A' | Entrez gene ID : 837505      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 3 3 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (112 genes)  IDA  
GO CC
GO:0015030 [list] [network] Cajal body  (12 genes)  IDA  
GO:0005654 [list] [network] nucleoplasm  (262 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
Protein NP_172447.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  cyto_nucl 4,  chlo 1,  plas 1  (predict for NP_172447.1)
Subcellular
localization
TargetP
other 7  (predict for NP_172447.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
U2A'
ath-r.7
for
U2A'
ath-m.9
for
U2A'
ath-e.2
for
U2A'
ath-m.4.bio
for
U2A'
ath-m.4.hor
for
U2A'
ath-m.4.lig
for
U2A'
ath-m.4.str
for
U2A'
ath-m.4.tis
for
U2A'
bra-r.6
for
103871750
bra-r.6
for
103843334
bra-r.6
for
103836312
bna-r.1
for
106362379
bna-r.1
for
106453136
bna-r.1
for
106419862
ghi-r.1
for
107896860
ghi-r.1
for
107914486
cit-r.1
for
102619436
gma-u.5
for
100803110
gma-u.5
for
100779162
vvi-u.5
for
100264276
ppo-u.5
for
7477768
mtr-u.5
for
25495091
sly-u.5
for
101248760
sot-r.1
for
102597690
nta-r.1
for
107778732
nta-r.1
for
107774413
osa-u.5
for
4328823
zma-u.5
for
100273115
tae-r.2
for
123087567
tae-r.2
for
123114359
tae-r.2
for
123114360
hvu-r.1
for
123395148
sbi-r.1
for
8061406
bdi-r.1
for
100839483
cre-r.1
for
CHLRE_16g679600v5


Ortholog ID: 6397
Species ath bra bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol U2A' LOC103871750 LOC103843334 LOC103836312 LOC106362379 LOC106416417 LOC106346251 LOC107896860 LOC107914486 LOC102619436 LOC100803110 LOC100779162 LOC100264276 LOC7477768 LOC25495091 LOC101248760 LOC102597690 LOC107778732 LOC107774413 LOC4328823 LOC100273115 LOC123114359 LOC123114360 LOC123123853 LOC123395148 LOC8061406 LOC100839483 CHLRE_16g679600v5
Function* U2 small nuclear ribonucleoprotein A U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A'-like U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A'-like U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A'-like U2 small nuclear ribonucleoprotein A'-like U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A'-like U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' uncharacterized LOC100273115 U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' U2 small nuclear ribonucleoprotein A' uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 10
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03010 Ribosome 3
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi03040 Spliceosome 2
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 9
ghi03040 Spliceosome 2
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 11
cit03040 Spliceosome 2
cit00510 N-Glycan biosynthesis 2
cit00513 Various types of N-glycan biosynthesis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
gma03040 Spliceosome 3
gma00230 Purine metabolism 2
gma00240 Pyrimidine metabolism 2
gma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma03010 Ribosome 3
gma03040 Spliceosome 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
sly03050 Proteasome 2
sly03420 Nucleotide excision repair 2
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03020 RNA polymerase 2
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta04626 Plant-pathogen interaction 4
nta03018 RNA degradation 2
nta03010 Ribosome 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta04626 Plant-pathogen interaction 4
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
osa03015 mRNA surveillance pathway 3
osa03013 Nucleocytoplasmic transport 2
osa03082 ATP-dependent chromatin remodeling 2
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 11
tae03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 12
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837505 103871750 103843334 103836312 106362379 106416417 106346251 107896860 107914486 102619436 100803110 100779162 100264276 7477768 25495091 101248760 102597690 107778732 107774413 4328823 100273115 123114359 123114360 123123853 123395148 8061406 100839483 5721540
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