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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g273413v5   uncharacterized protein 
 ath-u.5   AT4G26600   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-u.5   OLI2   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 gma-u.5   100807160   26S rRNA (cytosine-C(5))-methyltransferase NOP2B 
 gma-u.5   100789776   26S rRNA (cytosine-C(5))-methyltransferase NOP2B 
 sly-u.5   101256604   26S rRNA (cytosine-C(5))-methyltransferase NOP2B 
 sly-u.5   101247282   26S rRNA (cytosine-C(5))-methyltransferase NOP2B-like 
 osa-u.5   4330579   26S rRNA (cytosine-C(5))-methyltransferase NOP2B 
 osa-u.5   4347787   26S rRNA (cytosine-C(5))-methyltransferase NOP2B 
 zma-u.5   103627666   25S rRNA (cytosine-C(5))-methyltransferase nop2 
 zma-u.5   100191678   S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 
 vvi-u.5   100265196   26S rRNA (cytosine-C(5))-methyltransferase NOP2B 
 ppo-u.5   7485119   26S rRNA (cytosine-C(5))-methyltransferase NOP2B 
 mtr-u.5   25490721   26S rRNA (cytosine-C(5))-methyltransferase NOP2B 

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Top 50 coexpressed genes to CHLRE_06g273413v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g273413v5 (cre-r.1 coexpression data)

CoexMap"5721792"


creCHLRE_06g273413v5 | Entrez gene ID : 5721792    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 2 2 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0070475 [list] [network] rRNA base methylation  (14 genes)  IEA  
GO:0000470 [list] [network] maturation of LSU-rRNA  (19 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:0009383 [list] [network] rRNA (cytosine-C5-)-methyltransferase activity  (2 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042923683.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 4,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_042923683.1)
Subcellular
localization
TargetP
chlo 5  (predict for XP_042923683.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g273413v5

.
ath-u.5
for
AT4G26600

.
ath-u.5
for
OLI2

.
gma-u.5
for
100807160

.
gma-u.5
for
100789776

.
sly-u.5
for
101256604

.
sly-u.5
for
101247282

.
osa-u.5
for
4330579

.
osa-u.5
for
4347787

.
zma-u.5
for
103627666

.
zma-u.5
for
100191678

.
vvi-u.5
for
100265196

.
ppo-u.5
for
7485119

.
mtr-u.5
for
25490721

.


Ortholog ID: 5353
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi ppo mtr tae tae ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol AT4G26600 OLI2 LOC100789776 LOC100807160 LOC101247282 LOC101256604 LOC4330579 LOC4347787 LOC103627666 LOC100191678 LOC103866374 LOC103851856 LOC100265196 LOC7485119 LOC25490721 LOC123138078 LOC123145347 LOC107893508 LOC107922470 LOC106447649 LOC106380872 CHLRE_06g273413v5 LOC8071757 LOC102592311 LOC102603613 LOC102620350 LOC100833497 LOC107827033 LOC107763385
Function* S-adenosyl-L-methionine-dependent methyltransferases superfamily protein S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 26S rRNA (cytosine-C(5))-methyltransferase NOP2B 26S rRNA (cytosine-C(5))-methyltransferase NOP2B 26S rRNA (cytosine-C(5))-methyltransferase NOP2B-like 26S rRNA (cytosine-C(5))-methyltransferase NOP2B 26S rRNA (cytosine-C(5))-methyltransferase NOP2B 26S rRNA (cytosine-C(5))-methyltransferase NOP2B 25S rRNA (cytosine-C(5))-methyltransferase nop2 S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 25S rRNA (cytosine-C(5))-methyltransferase nop2 probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 26S rRNA (cytosine-C(5))-methyltransferase NOP2B 26S rRNA (cytosine-C(5))-methyltransferase NOP2B 26S rRNA (cytosine-C(5))-methyltransferase NOP2B 26S rRNA (cytosine-C(5))-methyltransferase NOP2B 26S rRNA (cytosine-C(5))-methyltransferase NOP2B 26S rRNA (cytosine-C(5))-methyltransferase NOP2B-like 26S rRNA (cytosine-C(5))-methyltransferase NOP2B 25S rRNA (cytosine-C(5))-methyltransferase NOP2A 25S rRNA (cytosine-C(5))-methyltransferase NOP2A uncharacterized protein 25S rRNA (cytosine-C(5))-methyltransferase nop2 25S rRNA (cytosine-C(5))-methyltransferase nop2-like 25S rRNA (cytosine-C(5))-methyltransferase nop2-like 26S rRNA (cytosine-C(5))-methyltransferase NOP2B 25S rRNA (cytosine-C(5))-methyltransferase nop2 26S rRNA (cytosine-C(5))-methyltransferase NOP2B-like 26S rRNA (cytosine-C(5))-methyltransferase NOP2B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi03010 Ribosome 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03008 Ribosome biogenesis in eukaryotes 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828767 835690 100789776 100807160 101247282 101256604 4330579 4347787 103627666 100191678 103866374 103851856 100265196 7485119 25490721 123138078 123145347 107893508 107922470 106447649 106380872 5721792 8071757 102592311 102603613 102620350 100833497 107827033 107763385
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