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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g248800v5   uncharacterized protein 
 ath-u.5   AT2G01640   ribosome biogenesis protein 
 gma-u.5   100527125   uncharacterized LOC100527125 
 gma-u.5   100802777   uncharacterized LOC100802777 
 sly-u.5   101245739   uncharacterized LOC101245739 
 osa-u.5   4351878   uncharacterized LOC4351878 
 vvi-u.5   100243540   uncharacterized LOC100243540 
 ppo-u.5   7490059   uncharacterized LOC7490059 
 mtr-u.5   25485424   uncharacterized LOC25485424 

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Top 50 coexpressed genes to CHLRE_06g248800v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g248800v5 (cre-r.1 coexpression data)

CoexMap"5722237"


creCHLRE_06g248800v5 | Entrez gene ID : 5722237      
Species cre ath gma sly osa vvi ppo mtr sbi nta bra hvu cit bdi sot zma tae bna ghi
Paralog 1 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000462 [list] [network] maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (29 genes)  IEA  
GO CC
GO:0030688 [list] [network] preribosome, small subunit precursor  (12 genes)  IEA  
GO:0030686 [list] [network] 90S preribosome  (30 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
Protein XP_001696672.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_001696672.1)
Subcellular
localization
TargetP
other 3,  mito 3  (predict for XP_001696672.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g248800v5

.
ath-u.5
for
AT2G01640

.
gma-u.5
for
100527125

.
gma-u.5
for
100802777

.
sly-u.5
for
101245739

.
osa-u.5
for
4351878

.
vvi-u.5
for
100243540

.
ppo-u.5
for
7490059

.
mtr-u.5
for
25485424

.


Ortholog ID: 7135
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT2G01640 LOC100527125 LOC100802777 LOC101245739 LOC4351878 LOC100278920 LOC103854050 LOC100243540 LOC7490059 LOC25485424 LOC123189514 LOC123053619 LOC123426996 LOC107908883 LOC107934996 LOC106432942 LOC106424274 CHLRE_06g248800v5 LOC8061224 LOC102604907 LOC102610202 LOC100837304 LOC107827565 LOC107831459
Function* ribosome biogenesis protein uncharacterized LOC100527125 uncharacterized LOC100802777 uncharacterized LOC101245739 uncharacterized LOC4351878 uncharacterized LOC100278920 putative ribosome biogenesis protein slx9-like uncharacterized LOC100243540 uncharacterized LOC7490059 uncharacterized LOC25485424 tetratricopeptide repeat protein 1 uncharacterized LOC123053619 uncharacterized LOC123426996 putative ribosome biogenesis protein slx9-like putative ribosome biogenesis protein slx9-like putative ribosome biogenesis protein slx9-like putative ribosome biogenesis protein slx9-like uncharacterized protein uncharacterized LOC8061224 uncharacterized LOC102604907 uncharacterized LOC102610202 uncharacterized LOC100837304 uncharacterized LOC107827565 uncharacterized LOC107831459
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 11
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
vvi00260 Glycine, serine and threonine metabolism 2
vvi00270 Cysteine and methionine metabolism 2
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03010 Ribosome 3
tae00053 Ascorbate and aldarate metabolism 2
tae01240 Biosynthesis of cofactors 2
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae03020 RNA polymerase 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot03008 Ribosome biogenesis in eukaryotes 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00740 Riboflavin metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 5
nta03420 Nucleotide excision repair 5
nta03022 Basal transcription factors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 814693 100527125 100802777 101245739 4351878 100278920 103854050 100243540 7490059 25485424 123189514 123053619 123426996 107908883 107934996 106432942 106424274 5722237 8061224 102604907 102610202 100837304 107827565 107831459
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