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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g526950v5   uncharacterized protein 
 ath-u.5   TAF5   TBP-associated factor 5 
 gma-u.5   100805953   transcription initiation factor TFIID subunit 5 
 gma-u.5   100790500   transcription initiation factor TFIID subunit 5 
 gma-u.5   100781563   transcription initiation factor TFIID subunit 5 
 sly-u.5   101268876   transcription initiation factor TFIID subunit 5 
 osa-u.5   4342682   transcription initiation factor TFIID subunit 5 
 osa-u.5   4341679   transcription initiation factor TFIID subunit 5 
 zma-u.5   103642689   transcription initiation factor TFIID subunit 5 
 zma-u.5   100274161   transcription initiation factor TFIID subunit 5 
 zma-u.5   100501797   uncharacterized LOC100501797 
 vvi-u.5   100254222   transcription initiation factor TFIID subunit 5 
 ppo-u.5   7489149   transcription initiation factor TFIID subunit 5 
 ppo-u.5   7465413   transcription initiation factor TFIID subunit 5 
 mtr-u.5   11425826   transcription initiation factor TFIID subunit 5 

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Top 50 coexpressed genes to CHLRE_12g526950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g526950v5 (cre-r.1 coexpression data)

CoexMap"5722474"


creCHLRE_12g526950v5 | Entrez gene ID : 5722474    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 3 1 2 3 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03022 [list] [network] Basal transcription factors (19 genes)
GO BP
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (25 genes)  IEA  
GO CC
GO:0005669 [list] [network] transcription factor TFIID complex  (14 genes)  IEA  
GO MF
GO:0016251 [list] [network] RNA polymerase II general transcription initiation factor activity  (14 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042918600.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 2,  mito 1  (predict for XP_042918600.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_042918600.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g526950v5

.
ath-u.5
for
TAF5

.
gma-u.5
for
100805953

.
gma-u.5
for
100790500

.
gma-u.5
for
100781563

.
sly-u.5
for
101268876

.
osa-u.5
for
4342682

.
osa-u.5
for
4341679

.
zma-u.5
for
103642689

.
zma-u.5
for
100274161

.
zma-u.5
for
100501797

.
vvi-u.5
for
100254222

.
ppo-u.5
for
7489149

.
ppo-u.5
for
7465413

.
mtr-u.5
for
11425826

.


Ortholog ID: 5378
Species ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol TAF5 LOC100805953 LOC100790500 LOC101268876 LOC4342682 LOC4341679 LOC100501797 LOC103642689 LOC103837080 LOC103854775 LOC100254222 LOC7489149 LOC7465413 LOC11425826 LOC123104518 LOC123413582 LOC107953742 LOC121219257 LOC106382625 LOC106365993 CHLRE_12g526950v5 LOC110431215 LOC102605539 LOC102624994 LOC100837458 LOC107830809 LOC107829673
Function* TBP-associated factor 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 uncharacterized LOC100501797 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 uncharacterized protein transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5 transcription initiation factor TFIID subunit 5-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 3
sly03018 RNA degradation 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03022 Basal transcription factors 2
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 2
ppo04136 Autophagy - other 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 4
mtr03083 Polycomb repressive complex 4
mtr03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
hvu03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03022 Basal transcription factors 3
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03022 Basal transcription factors 3
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
cre03020 RNA polymerase 4
cre03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta03015 mRNA surveillance pathway 2
nta04382 Cornified envelope formation 2
nta03022 Basal transcription factors 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta03022 Basal transcription factors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832586 100805953 100790500 101268876 4342682 4341679 100501797 103642689 103837080 103854775 100254222 7489149 7465413 11425826 123104518 123413582 107953742 121219257 106382625 106365993 5722474 110431215 102605539 102624994 100837458 107830809 107829673
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