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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_09g407100v5   uncharacterized protein 
 ath-u.5   AT1G64880   Ribosomal protein S5 family protein 
 gma-u.5   100809192   DNA ligase 1 
 gma-u.5   100800084   uncharacterized LOC100800084 
 sly-u.5   101251434   uncharacterized LOC101251434 
 osa-u.5   4327989   uncharacterized LOC4327989 
 zma-u.5   100281473   uncharacterized LOC100281473 
 vvi-u.5   100267778   uncharacterized LOC100267778 
 ppo-u.5   7493894   uncharacterized LOC7493894 
 mtr-u.5   11439488   uncharacterized LOC11439488 

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Top 50 coexpressed genes to CHLRE_09g407100v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_09g407100v5 (cre-r.1 coexpression data)

CoexMap"5723231"


creCHLRE_09g407100v5 | Entrez gene ID : 5723231    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006412 [list] [network] translation  (268 genes)  IEA  
GO CC
GO:0005840 [list] [network] ribosome  (168 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (164 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042921491.1 [sequence] [blastp]
XP_042921492.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_042921491.1)
chlo 9,  mito 1,  pero 1  (predict for XP_042921492.1)
Subcellular
localization
TargetP
chlo 6  (predict for XP_042921491.1)
chlo 5  (predict for XP_042921492.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_09g407100v5

.
ath-u.5
for
AT1G64880

.
gma-u.5
for
100809192

.
gma-u.5
for
100800084

.
sly-u.5
for
101251434

.
osa-u.5
for
4327989

.
zma-u.5
for
100281473

.
vvi-u.5
for
100267778

.
ppo-u.5
for
7493894

.
mtr-u.5
for
11439488

.


Ortholog ID: 9863
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G64880 LOC100800084 LOC100809192 LOC101251434 LOC4327989 LOC100281473 LOC103853303 LOC100267778 LOC7493894 LOC11439488 LOC123157284 LOC123171432 LOC123411315 LOC121212523 LOC107922572 LOC106390386 LOC106408627 CHLRE_09g407100v5 LOC110434418 LOC102603531 LOC102608648 LOC100830533 LOC107812456 LOC107770348
Function* Ribosomal protein S5 family protein uncharacterized LOC100800084 DNA ligase 1 uncharacterized LOC101251434 uncharacterized LOC4327989 uncharacterized LOC100281473 uncharacterized LOC103853303 uncharacterized LOC100267778 uncharacterized LOC7493894 uncharacterized LOC11439488 uncharacterized LOC123157284 uncharacterized LOC123171432 uncharacterized LOC123411315 uncharacterized LOC121212523 uncharacterized LOC107922572 uncharacterized LOC106390386 uncharacterized LOC106408627 uncharacterized protein uncharacterized LOC110434418 uncharacterized LOC102603531 uncharacterized LOC102608648 zinc finger CCCH domain-containing protein 13 uncharacterized LOC107812456 uncharacterized LOC107770348
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03040 Spliceosome 3
gma04141 Protein processing in endoplasmic reticulum 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 9
osa03008 Ribosome biogenesis in eukaryotes 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 4
bra00230 Purine metabolism 3
bra01240 Biosynthesis of cofactors 3
bra00970 Aminoacyl-tRNA biosynthesis 3
bra01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 14
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 8
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 9
bna03010 Ribosome 3
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
bna01230 Biosynthesis of amino acids 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 9
bna03010 Ribosome 3
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
bna01230 Biosynthesis of amino acids 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
cit03008 Ribosome biogenesis in eukaryotes 2
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 9
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 8
nta03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 8
nta03010 Ribosome 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842796 100800084 100809192 101251434 4327989 100281473 103853303 100267778 7493894 11439488 123157284 123171432 123411315 121212523 107922572 106390386 106408627 5723231 110434418 102603531 102608648 100830533 107812456 107770348
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