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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g663500v5   uncharacterized protein 
 ath-u.5   RPN10   regulatory particle non-ATPase 10 
 gma-u.5   100814594   26S proteasome non-ATPase regulatory subunit 4 homolog 
 gma-u.5   100803975   26S proteasome non-ATPase regulatory subunit 4-like 
 gma-u.5   100791370   26S proteasome non-ATPase regulatory subunit 4 homolog 
 sly-u.5   101263071   26S proteasome non-ATPase regulatory subunit 4 homolog 
 osa-u.5   4332222   26S proteasome non-ATPase regulatory subunit 4 homolog 
 zma-u.5   100272940   26S proteasome non-ATPase regulatory subunit 4-like protein 
 zma-u.5   100382157   uncharacterized LOC100382157 
 zma-u.5   100283637   26S proteasome non-ATPase regulatory subunit 4 
 vvi-u.5   100257366   26S proteasome non-ATPase regulatory subunit 4 homolog 
 ppo-u.5   18101099   26S proteasome non-ATPase regulatory subunit 4 homolog 
 ppo-u.5   7472128   26S proteasome non-ATPase regulatory subunit 4 homolog 
 ppo-u.5   7470392   26S proteasome non-ATPase regulatory subunit 4 homolog 
 mtr-u.5   11413707   26S proteasome non-ATPase regulatory subunit 4 homolog 
 mtr-u.5   11434921   26S proteasome non-ATPase regulatory subunit 4 homolog 

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Top 50 coexpressed genes to CHLRE_16g663500v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g663500v5 (cre-r.1 coexpression data)

CoexMap"5723522"


creCHLRE_16g663500v5 | Entrez gene ID : 5723522    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 3 1 1 3 1 3 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03050 [list] [network] Proteasome (36 genes)
GO BP
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (98 genes)  IEA  
GO CC
GO:0008540 [list] [network] proteasome regulatory particle, base subcomplex  (11 genes)  IEA  
GO:0005829 [list] [network] cytosol  (481 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0031593 [list] [network] polyubiquitin modification-dependent protein binding  (12 genes)  IEA  
Protein XP_001697888.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  mito 3,  cyto_pero 3  (predict for XP_001697888.2)
Subcellular
localization
TargetP
other 8  (predict for XP_001697888.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g663500v5

.
ath-u.5
for
RPN10

.
gma-u.5
for
100814594

.
gma-u.5
for
100803975

.
gma-u.5
for
100791370

.
sly-u.5
for
101263071

.
osa-u.5
for
4332222

.
zma-u.5
for
100272940

.
zma-u.5
for
100382157

.
zma-u.5
for
100283637

.
vvi-u.5
for
100257366

.
ppo-u.5
for
18101099

.
ppo-u.5
for
7472128

.
ppo-u.5
for
7470392

.
mtr-u.5
for
11413707

.
mtr-u.5
for
11434921

.


Ortholog ID: 3968
Species ath gma gma sly osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol RPN10 LOC100814594 LOC100780583 LOC101263071 LOC4332222 LOC100272940 LOC100382157 LOC103835173 LOC103828090 LOC100257366 LOC7472128 LOC7470392 LOC11434921 LOC11413707 LOC123092794 LOC123085192 LOC123449176 LOC107936579 LOC107909460 LOC106410132 LOC106389909 CHLRE_16g663500v5 LOC8078860 LOC102594714 LOC102609685 LOC102626734 LOC100841877 LOC107808066 LOC107798338
Function* regulatory particle non-ATPase 10 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4-like protein uncharacterized LOC100382157 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog uncharacterized protein 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog 26S proteasome non-ATPase regulatory subunit 4 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 4
gma03420 Nucleotide excision repair 4
gma04141 Protein processing in endoplasmic reticulum 4
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 14
zma04141 Protein processing in endoplasmic reticulum 3
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 9
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 12
ppo00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
mtr03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 9
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 10
tae03015 mRNA surveillance pathway 4
tae04382 Cornified envelope formation 3
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 13
tae03060 Protein export 2
tae04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 8
hvu03060 Protein export 3
hvu04144 Endocytosis 3
hvu04145 Phagosome 2
hvu04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00480 Glutathione metabolism 2
ghi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00480 Glutathione metabolism 2
ghi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 8
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 7
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 16
cre04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 8
sbi03420 Nucleotide excision repair 2
sbi04141 Protein processing in endoplasmic reticulum 2
sbi03013 Nucleocytoplasmic transport 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 15
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 12
cit04141 Protein processing in endoplasmic reticulum 3
cit00510 N-Glycan biosynthesis 2
cit00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 9
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 4
nta03040 Spliceosome 2
nta03060 Protein export 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 4
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830019 100814594 100780583 101263071 4332222 100272940 100382157 103835173 103828090 100257366 7472128 7470392 11434921 11413707 123092794 123085192 123449176 107936579 107909460 106410132 106389909 5723522 8078860 102594714 102609685 102626734 100841877 107808066 107798338
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