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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g649600v5   uncharacterized protein 
 ath-u.5   PUM23   pumilio 23 
 gma-u.5   100797960   pumilio homolog 23 
 sly-u.5   101245238   pumilio homolog 23 
 osa-u.5   4348523   pumilio homolog 23 
 zma-u.5   100383838   Pumilio homolog 23 
 vvi-u.5   100248091   pumilio homolog 23 
 ppo-u.5   7471608   pumilio homolog 23 
 mtr-u.5   25499754   pumilio homolog 23 

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Top 50 coexpressed genes to CHLRE_16g649600v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g649600v5 (cre-r.1 coexpression data)

CoexMap"5723731"


creCHLRE_16g649600v5 | Entrez gene ID : 5723731      
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000472 [list] [network] endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (3 genes)  IEA  
GO:0000480 [list] [network] endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (3 genes)  IEA  
GO:0000056 [list] [network] ribosomal small subunit export from nucleus  (4 genes)  IEA  
GO:0000447 [list] [network] endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (6 genes)  IEA  
GO CC
GO:0030688 [list] [network] preribosome, small subunit precursor  (12 genes)  IEA  
GO:0030686 [list] [network] 90S preribosome  (30 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_001698174.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  cyto 2,  cysk 1,  golg 1  (predict for XP_001698174.1)
Subcellular
localization
TargetP
other 8  (predict for XP_001698174.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g649600v5

.
ath-u.5
for
PUM23

.
gma-u.5
for
100797960

.
sly-u.5
for
101245238

.
osa-u.5
for
4348523

.
zma-u.5
for
100383838

.
vvi-u.5
for
100248091

.
ppo-u.5
for
7471608

.
mtr-u.5
for
25499754

.


Ortholog ID: 9293
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol PUM23 LOC100797960 LOC101245238 LOC4348523 LOC100383838 LOC103831743 LOC100248091 LOC7471608 LOC25499754 LOC123143463 LOC123131946 LOC123402150 LOC107958342 LOC107906031 LOC106354209 LOC106406780 CHLRE_16g649600v5 LOC8060336 LOC102587021 LOC102619433 LOC100844200 LOC107826715 LOC107797789
Function* pumilio 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 Pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23-like uncharacterized protein pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 4
sly03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 7
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843564 100797960 101245238 4348523 100383838 103831743 100248091 7471608 25499754 123143463 123131946 123402150 107958342 107906031 106354209 106406780 5723731 8060336 102587021 102619433 100844200 107826715 107797789
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