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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7471608   pumilio homolog 23 
 ppo-r.4   7471608   pumilio homolog 23 
 ppo-m.4   7471608   pumilio homolog 23 
 gma-u.5   100797960   pumilio homolog 23 
 mtr-u.5   25499754   pumilio homolog 23 
 ath-u.5   PUM23   pumilio 23 
 bra-r.6   103831743   pumilio homolog 23 
 vvi-u.5   100248091   pumilio homolog 23 
 ghi-r.1   107906031   pumilio homolog 23 
 ghi-r.1   107958342   pumilio homolog 23 
 bna-r.1   106354209   pumilio homolog 23 
 bna-r.1   106406780   pumilio homolog 23-like 
 cit-r.1   102619433   pumilio homolog 23 
 sly-u.5   101245238   pumilio homolog 23 
 sot-r.1   102587021   pumilio homolog 23 
 nta-r.1   107788955   pumilio homolog 23-like 
 nta-r.1   107826715   pumilio homolog 23 
 nta-r.1   107823470   pumilio homolog 23-like 
 osa-u.5   4348523   pumilio homolog 23 
 zma-u.5   100383838   Pumilio homolog 23 
 tae-r.2   123131946   pumilio homolog 23 
 tae-r.2   123135959   pumilio homolog 23 
 tae-r.2   123143463   pumilio homolog 23 
 hvu-r.1   123402150   pumilio homolog 23 
 sbi-r.1   8060336   pumilio homolog 23 
 bdi-r.1   100844200   pumilio homolog 23 
 cre-r.1   CHLRE_16g649600v5   uncharacterized protein 

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Top 50 coexpressed genes to 7471608 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7471608 (ppo-u.5 coexpression data)

CoexMap"7471608"


ppoLOC7471608 | Entrez gene ID : 7471608    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 1 1 1 1 2 2 1 1 1 3 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000472 [list] [network] endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (2 genes)  IEA  
GO:0000480 [list] [network] endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (2 genes)  IEA  
GO:0000447 [list] [network] endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (5 genes)  IEA  
GO:0000056 [list] [network] ribosomal small subunit export from nucleus  (7 genes)  IEA  
GO CC
GO:0030688 [list] [network] preribosome, small subunit precursor  (14 genes)  IEA  
GO:0030686 [list] [network] 90S preribosome  (48 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (220 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
Protein XP_052307554.1 [sequence] [blastp]
XP_052307555.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  cysk_nucl 3  (predict for XP_052307554.1)
nucl 4,  chlo 3,  cysk 2,  cyto_nucl 2,  nucl_plas 2  (predict for XP_052307555.1)
Subcellular
localization
TargetP
other 5,  mito 4  (predict for XP_052307554.1)
other 5,  mito 4  (predict for XP_052307555.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7471608
ppo-r.4
for
7471608
ppo-m.4
for
7471608
gma-u.5
for
100797960
mtr-u.5
for
25499754
ath-u.5
for
PUM23
bra-r.6
for
103831743
vvi-u.5
for
100248091
ghi-r.1
for
107906031
ghi-r.1
for
107958342
bna-r.1
for
106354209
bna-r.1
for
106406780
cit-r.1
for
102619433
sly-u.5
for
101245238
sot-r.1
for
102587021
nta-r.1
for
107788955
nta-r.1
for
107826715
nta-r.1
for
107823470
osa-u.5
for
4348523
zma-u.5
for
100383838
tae-r.2
for
123131946
tae-r.2
for
123135959
tae-r.2
for
123143463
hvu-r.1
for
123402150
sbi-r.1
for
8060336
bdi-r.1
for
100844200
cre-r.1
for
CHLRE_16g649600v5


Ortholog ID: 9293
Species ppo gma mtr ath bra vvi ghi ghi bna bna cit sly sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC7471608 LOC100797960 LOC25499754 PUM23 LOC103831743 LOC100248091 LOC107906031 LOC107958342 LOC106354209 LOC106406780 LOC102619433 LOC101245238 LOC102587021 LOC107826715 LOC107823470 LOC107797789 LOC4348523 LOC100383838 LOC123131946 LOC123135959 LOC123143463 LOC123402150 LOC8060336 LOC100844200 CHLRE_16g649600v5
Function* pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23-like pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23-like pumilio homolog 23 pumilio homolog 23 Pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 pumilio homolog 23 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 7
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 4
sly03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7471608 100797960 25499754 843564 103831743 100248091 107906031 107958342 106354209 106406780 102619433 101245238 102587021 107826715 107823470 107797789 4348523 100383838 123131946 123135959 123143463 123402150 8060336 100844200 5723731
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