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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g651000v5   uncharacterized protein 
 ath-u.5   RPA70B   RPA70-kDa subunit B 
 ath-u.5   RPA70D   Replication factor-A protein 1-like protein 
 gma-u.5   100808364   replication protein A 70 kDa DNA-binding subunit B 
 gma-u.5   100777091   replication protein A 70 kDa DNA-binding subunit B 
 sly-u.5   101255870   replication protein A 70 kDa DNA-binding subunit B 
 osa-u.5   4332052   replication protein A 70 kDa DNA-binding subunit B-like 
 zma-u.5   100273584   Replication protein A DNA-binding subunit 
 zma-u.5   100280726   uncharacterized LOC100280726 
 vvi-u.5   100255412   replication protein A 70 kDa DNA-binding subunit B 
 ppo-u.5   18105740   replication protein A 70 kDa DNA-binding subunit B 
 mtr-u.5   25493890   replication protein A 70 kDa DNA-binding subunit B 

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Top 50 coexpressed genes to CHLRE_16g651000v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g651000v5 (cre-r.1 coexpression data)

CoexMap"5723800"


creCHLRE_16g651000v5 | Entrez gene ID : 5723800      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 2 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03030 [list] [network] DNA replication (30 genes)
cre03420 [list] [network] Nucleotide excision repair (42 genes)
cre03430 [list] [network] Mismatch repair (15 genes)
cre03440 [list] [network] Homologous recombination (15 genes)
cre03460 [list] [network] Fanconi anemia pathway (16 genes)
GO BP
GO:0007004 [list] [network] telomere maintenance via telomerase  (6 genes)  IEA  
GO:0006289 [list] [network] nucleotide-excision repair  (28 genes)  IEA  
GO:0051321 [list] [network] meiotic cell cycle  (46 genes)  IEA  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (82 genes)  IEA  
GO:0006260 [list] [network] DNA replication  (93 genes)  IEA  
GO CC
GO:0005662 [list] [network] DNA replication factor A complex  (3 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0043047 [list] [network] single-stranded telomeric DNA binding  (5 genes)  IEA  
GO:0003684 [list] [network] damaged DNA binding  (27 genes)  IEA  
Protein XP_001698157.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 2,  chlo 1,  nucl_plas 1  (predict for XP_001698157.1)
Subcellular
localization
TargetP
other 7  (predict for XP_001698157.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g651000v5

.
ath-u.5
for
RPA70B

.
ath-u.5
for
RPA70D

.
gma-u.5
for
100808364

.
gma-u.5
for
100777091

.
sly-u.5
for
101255870

.
osa-u.5
for
4332052

.
zma-u.5
for
100273584

.
zma-u.5
for
100280726

.
vvi-u.5
for
100255412

.
ppo-u.5
for
18105740

.
mtr-u.5
for
25493890

.


Ortholog ID: 6337
Species ath ath gma gma sly osa zma zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol RPA70D RPA70B LOC100777091 LOC100808364 LOC101255870 LOC4332052 LOC100280726 LOC100273584 LOC103860562 LOC103855752 LOC100255412 LOC18105740 LOC25493890 LOC123085080 LOC123098249 LOC123449318 LOC107949785 LOC107887093 LOC106409231 LOC106439952 CHLRE_16g651000v5 LOC8056889 LOC8081088 LOC102589752 LOC102626798 LOC100845662 LOC107823681 LOC107790306
Function* Replication factor-A protein 1-like protein RPA70-kDa subunit B replication protein A 70 kDa DNA-binding subunit B replication protein A 70 kDa DNA-binding subunit B replication protein A 70 kDa DNA-binding subunit B replication protein A 70 kDa DNA-binding subunit B-like uncharacterized LOC100280726 Replication protein A DNA-binding subunit replication protein A 70 kDa DNA-binding subunit D replication protein A 70 kDa DNA-binding subunit B replication protein A 70 kDa DNA-binding subunit B replication protein A 70 kDa DNA-binding subunit B replication protein A 70 kDa DNA-binding subunit B replication protein A 70 kDa DNA-binding subunit B replication protein A 70 kDa DNA-binding subunit B replication protein A 70 kDa DNA-binding subunit B-like replication protein A 70 kDa DNA-binding subunit B replication protein A 70 kDa DNA-binding subunit B replication protein A 70 kDa DNA-binding subunit D-like replication protein A 70 kDa DNA-binding subunit D uncharacterized protein replication protein A 70 kDa DNA-binding subunit B replication protein A 70 kDa DNA-binding subunit B replication protein A 70 kDa DNA-binding subunit B replication protein A 70 kDa DNA-binding subunit B replication protein A 70 kDa DNA-binding subunit B replication protein A 70 kDa DNA-binding subunit B-like replication protein A 70 kDa DNA-binding subunit B-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 4
ath03420 Nucleotide excision repair 3
ath03430 Mismatch repair 3
ath03440 Homologous recombination 3
ath03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 5
ath03440 Homologous recombination 5
ath03420 Nucleotide excision repair 4
ath03430 Mismatch repair 4
ath03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 4
gma00240 Pyrimidine metabolism 4
gma01232 Nucleotide metabolism 4
gma03440 Homologous recombination 2
gma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 9
gma00240 Pyrimidine metabolism 3
gma01232 Nucleotide metabolism 3
gma03420 Nucleotide excision repair 2
gma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 3
sly03430 Mismatch repair 2
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 6
osa03420 Nucleotide excision repair 2
osa03430 Mismatch repair 2
osa03440 Homologous recombination 2
osa03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 7
zma03420 Nucleotide excision repair 3
zma00230 Purine metabolism 2
zma00240 Pyrimidine metabolism 2
zma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 7
zma03420 Nucleotide excision repair 4
zma03430 Mismatch repair 4
zma03440 Homologous recombination 3
zma03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 6
bra03420 Nucleotide excision repair 4
bra03410 Base excision repair 3
bra03430 Mismatch repair 3
bra03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 10
bra03420 Nucleotide excision repair 4
bra03430 Mismatch repair 4
bra03440 Homologous recombination 4
bra03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04145 Phagosome 2
vvi04517 IgSF CAM signaling 2
vvi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 11
ppo03420 Nucleotide excision repair 3
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 4
mtr03420 Nucleotide excision repair 2
mtr03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 12
tae03420 Nucleotide excision repair 4
tae03430 Mismatch repair 4
tae03440 Homologous recombination 4
tae03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 10
tae03420 Nucleotide excision repair 4
tae03430 Mismatch repair 4
tae03440 Homologous recombination 4
tae03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 5
ghi01232 Nucleotide metabolism 5
ghi00230 Purine metabolism 4
ghi00480 Glutathione metabolism 4
ghi03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 4
ghi00240 Pyrimidine metabolism 4
ghi00480 Glutathione metabolism 4
ghi01232 Nucleotide metabolism 4
ghi03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 8
bna03460 Fanconi anemia pathway 8
bna03030 DNA replication 7
bna03420 Nucleotide excision repair 6
bna03430 Mismatch repair 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 8
bna03460 Fanconi anemia pathway 8
bna03030 DNA replication 6
bna03420 Nucleotide excision repair 6
bna03430 Mismatch repair 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 8
cre03420 Nucleotide excision repair 2
cre03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 7
sbi03440 Homologous recombination 3
sbi03430 Mismatch repair 3
sbi03420 Nucleotide excision repair 2
sbi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 9
sbi03420 Nucleotide excision repair 3
sbi03430 Mismatch repair 3
sbi03440 Homologous recombination 2
sbi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00240 Pyrimidine metabolism 2
sot01232 Nucleotide metabolism 2
sot03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 9
bdi03440 Homologous recombination 3
bdi03460 Fanconi anemia pathway 2
bdi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 5
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 4
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
nta00310 Lysine degradation 2
nta03030 DNA replication 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836221 830696 100777091 100808364 101255870 4332052 100280726 100273584 103860562 103855752 100255412 18105740 25493890 123085080 123098249 123449318 107949785 107887093 106409231 106439952 5723800 8056889 8081088 102589752 102626798 100845662 107823681 107790306
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