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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g102250v5   ribosomal protein S3 
 ath-u.5   AT2G31610   Ribosomal protein S3 family protein 
 ath-u.5   AT3G53870   Ribosomal protein S3 family protein 
 ath-u.5   AT5G35530   Ribosomal protein S3 family protein 
 gma-u.5   100799156   40S ribosomal protein S3-3 
 gma-u.5   100808705   40S ribosomal protein S3 
 gma-u.5   100800747   40S ribosomal protein S3-3 
 sly-u.5   101257282   small ribosomal subunit protein uS3y 
 sly-u.5   101244892   small ribosomal subunit protein uS3x-like 
 sly-u.5   101244604   small ribosomal subunit protein uS3x 
 osa-u.5   4343869   40S ribosomal protein S3-1 
 osa-u.5   4333308   small ribosomal subunit protein uS3y 
 zma-u.5   100282772   40S ribosomal protein S3-like 
 zma-u.5   100274348   40S ribosomal protein S3-1 
 zma-u.5   100194112   40S ribosomal protein S3-1 
 vvi-u.5   100261737   small ribosomal subunit protein uS3x 
 vvi-u.5   100259512   small ribosomal subunit protein uS3x 
 ppo-u.5   7463768   40S ribosomal protein S3-3 
 ppo-u.5   7474877   40S ribosomal protein S3-3 
 ppo-u.5   7483474   40S ribosomal protein S3-3 
 mtr-u.5   11414550   40S ribosomal protein S3-3 
 mtr-u.5   25485537   40S ribosomal protein S3-3 
 mtr-u.5   11441628   40S ribosomal protein S3-1 

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Top 50 coexpressed genes to CHLRE_02g102250v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g102250v5 (cre-r.1 coexpression data)

CoexMap"5725348"


creCHLRE_02g102250v5 | Entrez gene ID : 5725348      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 3 3 3 2 3 2 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03010 [list] [network] Ribosome (149 genes)
GO BP
GO:0006412 [list] [network] translation  (268 genes)  IEA  
GO CC
GO:0022627 [list] [network] cytosolic small ribosomal subunit  (30 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (164 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_001699797.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 3,  nucl 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_001699797.2)
Subcellular
localization
TargetP
other 5,  mito 3  (predict for XP_001699797.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g102250v5

.
ath-u.5
for
AT2G31610

.
ath-u.5
for
AT3G53870

.
ath-u.5
for
AT5G35530

.
gma-u.5
for
100799156

.
gma-u.5
for
100808705

.
gma-u.5
for
100800747

.
sly-u.5
for
101257282

.
sly-u.5
for
101244892

.
sly-u.5
for
101244604

.
osa-u.5
for
4343869

.
osa-u.5
for
4333308

.
zma-u.5
for
100282772

.
zma-u.5
for
100274348

.
zma-u.5
for
100194112

.
vvi-u.5
for
100261737

.
vvi-u.5
for
100259512

.
ppo-u.5
for
7463768

.
ppo-u.5
for
7474877

.
ppo-u.5
for
7483474

.
mtr-u.5
for
11414550

.
mtr-u.5
for
25485537

.
mtr-u.5
for
11441628

.


Ortholog ID: 1489
Species ath ath gma gma sly sly osa osa zma zma bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT2G31610 AT3G53870 LOC100808705 LOC100499737 LOC101257282 LOC101244604 LOC4343869 LOC4333308 LOC100194112 LOC100282772 LOC103865126 LOC100261737 LOC100259512 LOC7483474 LOC7463768 LOC11414550 LOC11440250 LOC123187980 LOC123052121 LOC123425352 LOC123413461 LOC107907112 LOC107958848 LOC106392854 LOC106437727 CHLRE_02g102250v5 LOC8069647 LOC8079175 LOC102580086 LOC102580417 LOC102623282 LOC102611929 LOC100829722 LOC100845739 LOC107819043 LOC107831973
Function* Ribosomal protein S3 family protein Ribosomal protein S3 family protein 40S ribosomal protein S3 40S ribosomal protein S3 small ribosomal subunit protein uS3y small ribosomal subunit protein uS3x 40S ribosomal protein S3-1 small ribosomal subunit protein uS3y 40S ribosomal protein S3-1 40S ribosomal protein S3-like 40S ribosomal protein S3-2 small ribosomal subunit protein uS3x small ribosomal subunit protein uS3x 40S ribosomal protein S3-3 40S ribosomal protein S3-3 40S ribosomal protein S3-3 40S ribosomal protein S3-1 40S ribosomal protein S3-3 40S ribosomal protein S3-3 40S ribosomal protein S3-3-like 40S ribosomal protein S3-3 40S ribosomal protein S3-2 40S ribosomal protein S3-3 40S ribosomal protein S3-2-like 40S ribosomal protein S3-2 ribosomal protein S3 40S ribosomal protein S3-3 40S ribosomal protein S3-3 40S ribosomal protein S3-3-like 40S ribosomal protein S3-3-like 40S ribosomal protein S3-3 40S ribosomal protein S3-3 40S ribosomal protein S3-3 40S ribosomal protein S3-3 small ribosomal subunit protein uS3z small ribosomal subunit protein uS3x-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 12
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 21
osa04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 12
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
tae03013 Nucleocytoplasmic transport 3
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 17
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 17
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
sot03008 Ribosome biogenesis in eukaryotes 3
sot03013 Nucleocytoplasmic transport 3
sot03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 19
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817719 824554 100808705 100499737 101257282 101244604 4343869 4333308 100194112 100282772 103865126 100261737 100259512 7483474 7463768 11414550 11440250 123187980 123052121 123425352 123413461 107907112 107958848 106392854 106437727 5725348 8069647 8079175 102580086 102580417 102623282 102611929 100829722 100845739 107819043 107831973
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