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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g104650v5   uncharacterized protein 
 ath-u.5   AT2G21440   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100794821   RNA-binding protein 28 
 gma-u.5   100791823   RNA-binding protein 28 
 sly-u.5   101263645   uncharacterized LOC101263645 
 osa-u.5   4334461   RNA-binding protein 28 
 osa-u.5   4334625   uncharacterized LOC4334625 
 zma-u.5   103625805   RNA-binding protein 28 
 vvi-u.5   100257200   uncharacterized LOC100257200 
 ppo-u.5   7464006   uncharacterized LOC7464006 
 mtr-u.5   11426394   RNA-binding protein 28 

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Top 50 coexpressed genes to CHLRE_02g104650v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g104650v5 (cre-r.1 coexpression data)

CoexMap"5725537"


creCHLRE_02g104650v5 | Entrez gene ID : 5725537      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03008 [list] [network] Ribosome biogenesis in eukaryotes (47 genes)
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042927412.1 [sequence] [blastp]
XP_042927413.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 2  (predict for XP_042927412.1)
nucl 8,  cyto 2  (predict for XP_042927413.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042927412.1)
other 9  (predict for XP_042927413.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g104650v5

.
ath-u.5
for
AT2G21440

.
gma-u.5
for
100794821

.
gma-u.5
for
100791823

.
sly-u.5
for
101263645

.
osa-u.5
for
4334461

.
osa-u.5
for
4334625

.
zma-u.5
for
103625805

.
vvi-u.5
for
100257200

.
ppo-u.5
for
7464006

.
mtr-u.5
for
11426394

.


Ortholog ID: 8394
Species ath gma gma sly osa osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT2G21440 LOC100791823 LOC100794821 LOC101263645 LOC4334625 LOC4334461 LOC103625805 LOC103842525 LOC100257200 LOC7464006 LOC11426394 LOC123123267 LOC123105484 LOC123452788 LOC107913544 LOC107920290 LOC106446365 LOC106365982 CHLRE_02g104650v5 LOC8081230 LOC102594402 LOC102622608 LOC100829322 LOC107828288 LOC107822442
Function* RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding protein 28 RNA-binding protein 28 uncharacterized LOC101263645 uncharacterized LOC4334625 RNA-binding protein 28 RNA-binding protein 28 RNA-binding protein 28 uncharacterized LOC100257200 uncharacterized LOC7464006 RNA-binding protein 28 RNA-binding protein 28 RNA-binding protein 28 RNA-binding protein 28 RNA-binding protein 28 RNA-binding protein 28 RNA-binding protein 28 RNA-binding protein 28 uncharacterized protein RNA-binding protein 28 RNA-binding protein 28 uncharacterized LOC102622608 RNA-binding protein 28 uncharacterized LOC107828288 uncharacterized LOC107822442
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 2
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
tae03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03040 Spliceosome 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816683 100791823 100794821 101263645 4334625 4334461 103625805 103842525 100257200 7464006 11426394 123123267 123105484 123452788 107913544 107920290 106446365 106365982 5725537 8081230 102594402 102622608 100829322 107828288 107822442
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