Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g102400v5   uncharacterized protein 
 ath-u.5   AT4G07950   DNA-directed RNA polymerase, subunit M, archaeal 
 ath-u.5   AT1G01210   DNA-directed RNA polymerase, subunit M, archaeal 
 gma-u.5   100815164   DNA-directed RNA polymerase III subunit RPC10 
 gma-u.5   100527062   DNA-directed RNA polymerase III subunit RPC9a-like 
 sly-u.5   101257966   uncharacterized LOC101257966 
 osa-u.5   4330285   uncharacterized LOC4330285 
 zma-u.5   100193056   DNA-directed RNA polymerase subunit 
 vvi-u.5   100243245   uncharacterized LOC100243245 
 ppo-u.5   7464273   uncharacterized LOC7464273 
 mtr-u.5   11431765   DNA-directed RNA polymerase III subunit RPC10 
 mtr-u.5   11429365   DNA-directed RNA polymerase III subunit RPC10 

close


Top 50 coexpressed genes to CHLRE_02g102400v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to CHLRE_02g102400v5 (cre-r.1 coexpression data)

CoexMap"5725557"


creCHLRE_02g102400v5 | Entrez gene ID : 5725557      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03020 [list] [network] RNA polymerase (29 genes)
GO BP
GO:0006386 [list] [network] termination of RNA polymerase III transcription  (1 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (95 genes)  IEA  
GO CC
GO:0005666 [list] [network] RNA polymerase III complex  (16 genes)  IEA  
GO MF
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (16 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (213 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (1484 genes)  IEA  
Protein XP_001699794.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo 3,  nucl 1,  plas 1,  extr 1,  cyto_nucl 1,  cysk_nucl 1  (predict for XP_001699794.1)
Subcellular
localization
TargetP
scret 7,  other 4  (predict for XP_001699794.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g102400v5

.
ath-u.5
for
AT4G07950

.
ath-u.5
for
AT1G01210

.
gma-u.5
for
100815164

.
gma-u.5
for
100527062

.
sly-u.5
for
101257966

.
osa-u.5
for
4330285

.
zma-u.5
for
100193056

.
vvi-u.5
for
100243245

.
ppo-u.5
for
7464273

.
mtr-u.5
for
11431765

.
mtr-u.5
for
11429365

.


Ortholog ID: 6918
Species ath ath gma gma sly osa zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot bdi nta nta
Symbol AT1G01210 AT4G07950 LOC100815164 LOC100527062 LOC101257966 LOC4330285 LOC100193056 LOC103840544 LOC100243245 LOC7464273 LOC11431765 LOC11429365 LOC123141635 LOC123127975 LOC123401809 LOC107900957 LOC107930967 LOC106364755 LOC106377365 CHLRE_02g102400v5 LOC8076045 LOC102591104 LOC100840316 LOC107762077 LOC107800054
Function* DNA-directed RNA polymerase, subunit M, archaeal DNA-directed RNA polymerase, subunit M, archaeal DNA-directed RNA polymerase III subunit RPC10 DNA-directed RNA polymerase III subunit RPC9a-like uncharacterized LOC101257966 uncharacterized LOC4330285 DNA-directed RNA polymerase subunit DNA-directed RNA polymerase III subunit RPC10 uncharacterized LOC100243245 uncharacterized LOC7464273 DNA-directed RNA polymerase III subunit RPC10 DNA-directed RNA polymerase III subunit RPC10 uncharacterized LOC123141635 uncharacterized LOC123127975 uncharacterized LOC123401809 DNA-directed RNA polymerase III subunit RPC10 DNA-directed RNA polymerase III subunit RPC10 DNA-directed RNA polymerase III subunit RPC10 DNA-directed RNA polymerase III subunit RPC10 uncharacterized protein DNA-directed RNA polymerase III subunit RPC10 DNA-directed RNA polymerase III subunit RPC10-like uncharacterized LOC100840316 uncharacterized LOC107762077 uncharacterized LOC107800054
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma03008 Ribosome biogenesis in eukaryotes 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 4
gma04145 Phagosome 4
gma03010 Ribosome 2
gma04142 Lysosome 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 7
sly03018 RNA degradation 2
sly03040 Spliceosome 2
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
zma03040 Spliceosome 2
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00520 Amino sugar and nucleotide sugar metabolism 2
vvi01250 Biosynthesis of nucleotide sugars 2
vvi03040 Spliceosome 2
vvi03020 RNA polymerase 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 5
mtr03420 Nucleotide excision repair 2
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03010 Ribosome 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03020 RNA polymerase 3
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03030 DNA replication 2
hvu03410 Base excision repair 2
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna00790 Folate biosynthesis 2
bna01240 Biosynthesis of cofactors 2
bna04122 Sulfur relay system 2
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03082 ATP-dependent chromatin remodeling 2
bna00790 Folate biosynthesis 2
bna01240 Biosynthesis of cofactors 2
bna04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03020 RNA polymerase 5
cre03008 Ribosome biogenesis in eukaryotes 4
cre03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 13
sot03020 RNA polymerase 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839481 826299 100815164 100527062 101257966 4330285 100193056 103840544 100243245 7464273 11431765 11429365 123141635 123127975 123401809 107900957 107930967 106364755 106377365 5725557 8076045 102591104 100840316 107762077 107800054
The preparation time of this page was 0.3 [sec].