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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_05g247600v5   uncharacterized protein 
 ath-u.5   MMZ3   MMS ZWEI homologue 3 
 ath-u.5   UEV1D-4   ubiquitin E2  
 ath-u.5   MMZ1   MMS ZWEI homologue 1 
 gma-u.5   100820440   ubiquitin-conjugating enzyme E2 variant 1B-like 
 gma-u.5   100306398   ubiquitin-protein ligase 
 gma-u.5   100499899   uncharacterized LOC100499899 
 sly-u.5   Suv   ubiquitin-conjugating enzyme E2 variant 1B-like 
 sly-u.5   Uev1D   ubiquitin-conjugating enzyme E2 variant 1D 
 sly-u.5   Uev1C   ubiquitin-conjugating enzyme E2 variant 1C 
 osa-u.5   4333892   ubiquitin-conjugating enzyme E2 variant 1D 
 osa-u.5   4337456   ubiquitin-conjugating enzyme E2 variant 1C 
 osa-u.5   4352739   ubiquitin-conjugating enzyme E2 variant 1C 
 zma-u.5   100279740   ubiquitin-conjugating enzyme E2 
 zma-u.5   100192908   uncharacterized LOC100192908 
 zma-u.5   103654688   ubiquitin-conjugating enzyme E2 
 vvi-u.5   100244148   ubiquitin-conjugating enzyme E2 variant 1C 
 vvi-u.5   100264453   ubiquitin-conjugating enzyme E2 variant 1A-like 
 vvi-u.5   100248369   ubiquitin-conjugating enzyme E2 variant 1D 
 ppo-u.5   7485297   ubiquitin-conjugating enzyme E2 variant 1D 
 ppo-u.5   7469962   ubiquitin-conjugating enzyme E2 variant 1D 
 ppo-u.5   7462681   ubiquitin-conjugating enzyme E2 variant 1A 
 mtr-u.5   11411155   ubiquitin-conjugating enzyme E2 variant 1B 
 mtr-u.5   25483759   ubiquitin-conjugating enzyme E2 variant 1C 

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Top 50 coexpressed genes to CHLRE_05g247600v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_05g247600v5 (cre-r.1 coexpression data)

CoexMap"5726489"


creCHLRE_05g247600v5 | Entrez gene ID : 5726489      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 3 3 3 3 3 3 3 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0070534 [list] [network] protein K63-linked ubiquitination  (1 genes)  IEA  
GO:0006301 [list] [network] DNA damage tolerance  (15 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
Protein XP_001700765.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_001700765.1)
Subcellular
localization
TargetP
other 8  (predict for XP_001700765.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_05g247600v5

.
ath-u.5
for
MMZ3

.
ath-u.5
for
UEV1D-4

.
ath-u.5
for
MMZ1

.
gma-u.5
for
100820440

.
gma-u.5
for
100306398

.
gma-u.5
for
100499899

.
sly-u.5
for
Suv

.
sly-u.5
for
Uev1D

.
sly-u.5
for
Uev1C

.
osa-u.5
for
4333892

.
osa-u.5
for
4337456

.
osa-u.5
for
4352739

.
zma-u.5
for
100279740

.
zma-u.5
for
100192908

.
zma-u.5
for
103654688

.
vvi-u.5
for
100244148

.
vvi-u.5
for
100264453

.
vvi-u.5
for
100248369

.
ppo-u.5
for
7485297

.
ppo-u.5
for
7469962

.
ppo-u.5
for
7462681

.
mtr-u.5
for
11411155

.
mtr-u.5
for
25483759

.


Ortholog ID: 969
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol MMZ3 MMZ1 LOC100801453 LOC100816570 Suv Uev1C LOC4346652 LOC4337456 LOC103654688 LOC100282170 LOC103840784 LOC103835674 LOC100264453 LOC100248369 LOC18101521 LOC7462681 LOC11411155 LOC25483759 LOC123114767 LOC123110464 LOC123447456 LOC123395492 LOC121228300 LOC107909929 LOC106440990 LOC106367823 CHLRE_05g247600v5 LOC8064657 LOC8076495 LOC102581905 LOC102588901 LOC102626070 LOC102577979 LOC100820845 LOC100837317 LOC107831808 LOC107815220
Function* MMS ZWEI homologue 3 MMS ZWEI homologue 1 ubiquitin-conjugating enzyme E2 variant 1A ubiquitin-conjugating enzyme E2 variant 1D ubiquitin-conjugating enzyme E2 variant 1B-like ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 uncharacterized LOC100282170 ubiquitin-conjugating enzyme E2 variant 1A ubiquitin-conjugating enzyme E2 variant 1A ubiquitin-conjugating enzyme E2 variant 1A-like ubiquitin-conjugating enzyme E2 variant 1D ubiquitin-conjugating enzyme E2 variant 1A ubiquitin-conjugating enzyme E2 variant 1A ubiquitin-conjugating enzyme E2 variant 1B ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 variant 1D-like ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 variant 1D-like ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 variant 1A ubiquitin-conjugating enzyme E2 variant 1A ubiquitin-conjugating enzyme E2 variant 1A ubiquitin-conjugating enzyme E2 variant 1D uncharacterized protein ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 variant 1D-like ubiquitin-conjugating enzyme E2 variant 1D-like ubiquitin-conjugating enzyme E2 variant 1B-like ubiquitin-conjugating enzyme variant ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 variant 1B ubiquitin-conjugating enzyme E2 variant 1C
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
ath04141 Protein processing in endoplasmic reticulum 2
ath03010 Ribosome 2
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 5
ath03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 4
gma00562 Inositol phosphate metabolism 2
gma00564 Glycerophospholipid metabolism 2
gma04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 4
sly04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 4
sly04141 Protein processing in endoplasmic reticulum 3
sly03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
osa03013 Nucleocytoplasmic transport 2
osa03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 8
zma03013 Nucleocytoplasmic transport 3
zma03040 Spliceosome 2
zma03083 Polycomb repressive complex 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00561 Glycerolipid metabolism 3
zma00566 Sulfoquinovose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 3
bra04145 Phagosome 3
bra04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
ppo03250 Viral life cycle - HIV-1 2
ppo03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
mtr04016 MAPK signaling pathway - plant 2
mtr04070 Phosphatidylinositol signaling system 2
mtr04075 Plant hormone signal transduction 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 7
tae03083 Polycomb repressive complex 5
tae04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 6
tae03040 Spliceosome 4
tae00590 Arachidonic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 2
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04122 Sulfur relay system 2
bna00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 3
cre04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 3
sbi04016 MAPK signaling pathway - plant 2
sbi04070 Phosphatidylinositol signaling system 2
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 6
sot04141 Protein processing in endoplasmic reticulum 3
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 5
sot03420 Nucleotide excision repair 3
sot04144 Endocytosis 3
sot04145 Phagosome 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 5
cit00190 Oxidative phosphorylation 3
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 7
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 3
bdi04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01232 Nucleotide metabolism 5
nta00240 Pyrimidine metabolism 3
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818179 838935 100801453 100816570 101266505 101253818 4346652 4337456 103654688 100282170 103840784 103835674 100264453 100248369 18101521 7462681 11411155 25483759 123114767 123110464 123447456 123395492 121228300 107909929 106440990 106367823 5726489 8064657 8076495 102581905 102588901 102626070 102577979 100820845 100837317 107831808 107815220
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