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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107909929   ubiquitin-conjugating enzyme E2 variant 1A 
 ath-u.5   MMZ3   MMS ZWEI homologue 3 
 ath-u.5   UEV1D-4   ubiquitin E2  
 ath-u.5   MMZ1   MMS ZWEI homologue 1 
 gma-u.5   100820440   ubiquitin-conjugating enzyme E2 variant 1B-like 
 gma-u.5   100816570   ubiquitin-conjugating enzyme E2 variant 1D 
 gma-u.5   100306398   ubiquitin-protein ligase 
 vvi-u.5   100264453   ubiquitin-conjugating enzyme E2 variant 1A-like 
 vvi-u.5   100248369   ubiquitin-conjugating enzyme E2 variant 1D 
 vvi-u.5   100244148   ubiquitin-conjugating enzyme E2 variant 1C 
 ppo-u.5   7485297   ubiquitin-conjugating enzyme E2 variant 1D 
 ppo-u.5   7469962   ubiquitin-conjugating enzyme E2 variant 1D 
 ppo-u.5   18101521   ubiquitin-conjugating enzyme E2 variant 1A 
 mtr-u.5   11411155   ubiquitin-conjugating enzyme E2 variant 1B 
 mtr-u.5   25483759   ubiquitin-conjugating enzyme E2 variant 1C 
 sly-u.5   Suv   ubiquitin-conjugating enzyme E2 variant 1B-like 
 sly-u.5   Uev1C   ubiquitin-conjugating enzyme E2 variant 1C 
 sly-u.5   Uev1D   ubiquitin-conjugating enzyme E2 variant 1D 
 osa-u.5   4333892   ubiquitin-conjugating enzyme E2 variant 1D 
 osa-u.5   4337456   ubiquitin-conjugating enzyme E2 variant 1C 
 osa-u.5   4352739   ubiquitin-conjugating enzyme E2 variant 1C 
 zma-u.5   100382057   uncharacterized LOC100382057 
 zma-u.5   100282170   uncharacterized LOC100282170 
 zma-u.5   100192908   uncharacterized LOC100192908 

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Top 50 coexpressed genes to 107909929 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107909929 (ghi-r.1 coexpression data)

CoexMap"107909929"


ghiLOC107909929 | Entrez gene ID : 107909929    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 3 3 3 3 2 3 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0070534 [list] [network] protein K63-linked ubiquitination  (22 genes)  IEA  
GO:0006301 [list] [network] DNA damage tolerance  (40 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
Protein XP_016693127.1 [sequence] [blastp]
XP_040944731.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_016693127.1)
chlo 6,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_040944731.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_016693127.1)
other 7,  mito 3  (predict for XP_040944731.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107909929
ath-u.5
for
MMZ3
ath-u.5
for
UEV1D-4
ath-u.5
for
MMZ1
gma-u.5
for
100820440
gma-u.5
for
100816570
gma-u.5
for
100306398
vvi-u.5
for
100264453
vvi-u.5
for
100248369
vvi-u.5
for
100244148
ppo-u.5
for
7485297
ppo-u.5
for
7469962
ppo-u.5
for
18101521
mtr-u.5
for
11411155
mtr-u.5
for
25483759
sly-u.5
for
Suv
sly-u.5
for
Uev1C
sly-u.5
for
Uev1D
osa-u.5
for
4333892
osa-u.5
for
4337456
osa-u.5
for
4352739
zma-u.5
for
100382057
zma-u.5
for
100282170
zma-u.5
for
100192908


Ortholog ID: 969
Species ghi ghi ath ath bra bra bna bna cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC121228300 LOC107909929 MMZ3 MMZ1 LOC103840784 LOC103835674 LOC106440990 LOC106367823 LOC102626070 LOC102577979 LOC100801453 LOC100816570 LOC100264453 LOC100248369 LOC18101521 LOC7462681 LOC11411155 LOC25483759 Suv Uev1C LOC102581905 LOC102588901 LOC107831808 LOC107815220 LOC4346652 LOC4337456 LOC103654688 LOC100282170 LOC123114767 LOC123110464 LOC123447456 LOC123395492 LOC8064657 LOC8076495 LOC100820845 LOC100837317 CHLRE_05g247600v5
Function* ubiquitin-conjugating enzyme E2 variant 1A ubiquitin-conjugating enzyme E2 variant 1A MMS ZWEI homologue 3 MMS ZWEI homologue 1 ubiquitin-conjugating enzyme E2 variant 1A ubiquitin-conjugating enzyme E2 variant 1A ubiquitin-conjugating enzyme E2 variant 1A ubiquitin-conjugating enzyme E2 variant 1D ubiquitin-conjugating enzyme E2 variant 1B-like ubiquitin-conjugating enzyme variant ubiquitin-conjugating enzyme E2 variant 1A ubiquitin-conjugating enzyme E2 variant 1D ubiquitin-conjugating enzyme E2 variant 1A-like ubiquitin-conjugating enzyme E2 variant 1D ubiquitin-conjugating enzyme E2 variant 1A ubiquitin-conjugating enzyme E2 variant 1A ubiquitin-conjugating enzyme E2 variant 1B ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 variant 1B-like ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 variant 1D-like ubiquitin-conjugating enzyme E2 variant 1D-like ubiquitin-conjugating enzyme E2 variant 1B ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 uncharacterized LOC100282170 ubiquitin-conjugating enzyme E2 variant 1D-like ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 variant 1D-like ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 variant 1C ubiquitin-conjugating enzyme E2 variant 1C uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
ath04141 Protein processing in endoplasmic reticulum 2
ath03010 Ribosome 2
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 5
ath03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 3
bra04145 Phagosome 3
bra04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04122 Sulfur relay system 2
bna00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 5
cit00190 Oxidative phosphorylation 3
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 4
gma00562 Inositol phosphate metabolism 2
gma00564 Glycerophospholipid metabolism 2
gma04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
ppo03250 Viral life cycle - HIV-1 2
ppo03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
mtr04016 MAPK signaling pathway - plant 2
mtr04070 Phosphatidylinositol signaling system 2
mtr04075 Plant hormone signal transduction 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 4
sly04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 4
sly04141 Protein processing in endoplasmic reticulum 3
sly03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 6
sot04141 Protein processing in endoplasmic reticulum 3
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 5
sot03420 Nucleotide excision repair 3
sot04144 Endocytosis 3
sot04145 Phagosome 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01232 Nucleotide metabolism 5
nta00240 Pyrimidine metabolism 3
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
osa03013 Nucleocytoplasmic transport 2
osa03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 8
zma03013 Nucleocytoplasmic transport 3
zma03040 Spliceosome 2
zma03083 Polycomb repressive complex 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00561 Glycerolipid metabolism 3
zma00566 Sulfoquinovose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 7
tae03083 Polycomb repressive complex 5
tae04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 6
tae03040 Spliceosome 4
tae00590 Arachidonic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 2
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 3
sbi04016 MAPK signaling pathway - plant 2
sbi04070 Phosphatidylinositol signaling system 2
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 7
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 3
bdi04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 3
cre04120 Ubiquitin mediated proteolysis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121228300 107909929 818179 838935 103840784 103835674 106440990 106367823 102626070 102577979 100801453 100816570 100264453 100248369 18101521 7462681 11411155 25483759 101266505 101253818 102581905 102588901 107831808 107815220 4346652 4337456 103654688 100282170 123114767 123110464 123447456 123395492 8064657 8076495 100820845 100837317 5726489
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