ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	18101521	ubiquitin-conjugating enzyme E2 variant 1A
ppo-r.4	18101521	ubiquitin-conjugating enzyme E2 variant 1A
ppo-u.5	7485297	ubiquitin-conjugating enzyme E2 variant 1D
ppo-u.5	7462681	ubiquitin-conjugating enzyme E2 variant 1A
ppo-u.5	7469962	ubiquitin-conjugating enzyme E2 variant 1D
gma-u.5	100820440	ubiquitin-conjugating enzyme E2 variant 1B-like
gma-u.5	100306398	ubiquitin-protein ligase
gma-u.5	100499899	uncharacterized LOC100499899
mtr-u.5	11411155	ubiquitin-conjugating enzyme E2 variant 1B
mtr-u.5	25483759	ubiquitin-conjugating enzyme E2 variant 1C
ath-u.5	MMZ3	MMS ZWEI homologue 3
ath-u.5	UEV1D-4	ubiquitin E2
ath-u.5	MMZ1	MMS ZWEI homologue 1
bra-r.6	103868367	ubiquitin-conjugating enzyme E2 variant 1D
bra-r.6	103863456	ubiquitin-conjugating enzyme E2 variant 1D
bra-r.6	103852673	ubiquitin-conjugating enzyme E2 variant 1B
vvi-u.5	100264453	ubiquitin-conjugating enzyme E2 variant 1A-like
vvi-u.5	100248369	ubiquitin-conjugating enzyme E2 variant 1D
vvi-u.5	100244148	ubiquitin-conjugating enzyme E2 variant 1C
ghi-r.1	121228300	ubiquitin-conjugating enzyme E2 variant 1A
ghi-r.1	107886278	ubiquitin-conjugating enzyme E2 variant 1A
ghi-r.1	107909929	ubiquitin-conjugating enzyme E2 variant 1A
bna-r.1	106434190	ubiquitin-conjugating enzyme E2 variant 1A
bna-r.1	106411865	ubiquitin-conjugating enzyme E2 variant 1D
bna-r.1	106406848	ubiquitin-conjugating enzyme E2 variant 1D
cit-r.1	102626070	ubiquitin-conjugating enzyme E2 variant 1B-like
cit-r.1	102577979	ubiquitin-conjugating enzyme variant
sly-u.5	Suv	ubiquitin-conjugating enzyme E2 variant 1B-like
sly-u.5	Uev1D	ubiquitin-conjugating enzyme E2 variant 1D
sly-u.5	Uev1C	ubiquitin-conjugating enzyme E2 variant 1C
sot-r.1	102588901	ubiquitin-conjugating enzyme E2 variant 1D-like
sot-r.1	102580207	ubiquitin-conjugating enzyme E2 variant 1B-like
sot-r.1	102581905	ubiquitin-conjugating enzyme E2 variant 1D-like
nta-r.1	107831038	ubiquitin-conjugating enzyme E2 variant 1A
nta-r.1	107761134	ubiquitin-conjugating enzyme E2 variant 1D
nta-r.1	107778179	ubiquitin-conjugating enzyme E2 variant 1D
osa-u.5	4333892	ubiquitin-conjugating enzyme E2 variant 1D
osa-u.5	4337456	ubiquitin-conjugating enzyme E2 variant 1C
osa-u.5	4352739	ubiquitin-conjugating enzyme E2 variant 1C
zma-u.5	100279740	ubiquitin-conjugating enzyme E2
zma-u.5	100192908	uncharacterized LOC100192908
zma-u.5	103654688	ubiquitin-conjugating enzyme E2
tae-r.2	123103446	ubiquitin-conjugating enzyme E2 variant 1C
tae-r.2	123111651	ubiquitin-conjugating enzyme E2 variant 1C
tae-r.2	123110464	ubiquitin-conjugating enzyme E2 variant 1C
hvu-r.1	123447456	ubiquitin-conjugating enzyme E2 variant 1D-like
hvu-r.1	123395753	ubiquitin-conjugating enzyme E2 variant 1D-like
hvu-r.1	123395492	ubiquitin-conjugating enzyme E2 variant 1C
sbi-r.1	8064657	ubiquitin-conjugating enzyme E2 variant 1C
sbi-r.1	8081633	ubiquitin-conjugating enzyme E2 variant 1C
sbi-r.1	8076495	ubiquitin-conjugating enzyme E2 variant 1C
bdi-r.1	100837317	ubiquitin-conjugating enzyme E2 variant 1C
bdi-r.1	100820845	ubiquitin-conjugating enzyme E2 variant 1C
cre-r.1	CHLRE_05g247600v5	uncharacterized protein

Top 50 coexpressed genes to 18101521 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 18101521 (ppo-u.5 coexpression data)

CoexMap"18101521"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0070534 [list] [network] protein K63-linked ubiquitination	(6 genes)	IEA
GO:0006301 [list] [network] DNA damage tolerance	(15 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(3662 genes)

IEA

GO MF

Protein

XP_006379776.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, cyto_nucl 2, chlo_mito 2, nucl 1, cyto 1

(predict for XP_006379776.2)

Subcellular
localization
TargetP

other 8

(predict for XP_006379776.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 18101521	ppo-r.4 for 18101521	ppo-u.5 for 7485297	ppo-u.5 for 7462681	ppo-u.5 for 7469962	gma-u.5 for 100820440	gma-u.5 for 100306398	gma-u.5 for 100499899	mtr-u.5 for 11411155	mtr-u.5 for 25483759	ath-u.5 for MMZ3	ath-u.5 for UEV1D-4	ath-u.5 for MMZ1	bra-r.6 for 103868367	bra-r.6 for 103863456	bra-r.6 for 103852673	vvi-u.5 for 100264453	vvi-u.5 for 100248369	vvi-u.5 for 100244148	ghi-r.1 for 121228300	ghi-r.1 for 107886278	ghi-r.1 for 107909929	bna-r.1 for 106434190	bna-r.1 for 106411865	bna-r.1 for 106406848	cit-r.1 for 102626070	cit-r.1 for 102577979	sly-u.5 for Suv	sly-u.5 for Uev1D	sly-u.5 for Uev1C	sot-r.1 for 102588901	sot-r.1 for 102580207	sot-r.1 for 102581905	nta-r.1 for 107831038	nta-r.1 for 107761134	nta-r.1 for 107778179	osa-u.5 for 4333892	osa-u.5 for 4337456	osa-u.5 for 4352739	zma-u.5 for 100279740	zma-u.5 for 100192908	zma-u.5 for 103654688	tae-r.2 for 123103446	tae-r.2 for 123111651	tae-r.2 for 123110464	hvu-r.1 for 123447456	hvu-r.1 for 123395753	hvu-r.1 for 123395492	sbi-r.1 for 8064657	sbi-r.1 for 8081633	sbi-r.1 for 8076495	bdi-r.1 for 100837317	bdi-r.1 for 100820845	cre-r.1 for CHLRE_05g247600v5

Ortholog

Ortholog ID: 969

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

MMZ3

UEV1D-4

MMZ1

Suv

Uev1D

Uev1C

Function^*

ubiquitin-conjugating enzyme E2 variant 1A

ubiquitin-conjugating enzyme E2 variant 1D

ubiquitin-conjugating enzyme E2 variant 1A

uncharacterized LOC100499899

ubiquitin-conjugating enzyme E2 variant 1A

ubiquitin-conjugating enzyme E2 variant 1D

ubiquitin-conjugating enzyme E2 variant 1B

ubiquitin-conjugating enzyme E2 variant 1C

MMS ZWEI homologue 3

ubiquitin E2

MMS ZWEI homologue 1

ubiquitin-conjugating enzyme E2 variant 1A

ubiquitin-conjugating enzyme E2 variant 1A-like

ubiquitin-conjugating enzyme E2 variant 1D

ubiquitin-conjugating enzyme E2 variant 1C

ubiquitin-conjugating enzyme E2 variant 1A

ubiquitin-conjugating enzyme E2 variant 1D

ubiquitin-conjugating enzyme E2 variant 1A

ubiquitin-conjugating enzyme E2 variant 1B-like

ubiquitin-conjugating enzyme variant

ubiquitin-conjugating enzyme E2 variant 1B-like

ubiquitin-conjugating enzyme E2 variant 1D

ubiquitin-conjugating enzyme E2 variant 1C

ubiquitin-conjugating enzyme E2 variant 1D-like

ubiquitin-conjugating enzyme E2 variant 1B-like

ubiquitin-conjugating enzyme E2 variant 1D-like

ubiquitin-conjugating enzyme E2 variant 1D

ubiquitin-conjugating enzyme E2 variant 1C

ubiquitin-conjugating enzyme E2 variant 1B

ubiquitin-conjugating enzyme E2 variant 1D

ubiquitin-conjugating enzyme E2 variant 1C

ubiquitin-conjugating enzyme E2

uncharacterized LOC100282170

uncharacterized LOC100382057

ubiquitin-conjugating enzyme E2 variant 1C

ubiquitin-conjugating enzyme E2 variant 1D

ubiquitin-conjugating enzyme E2 variant 1D-like

ubiquitin-conjugating enzyme E2 variant 1C

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	6
ppo04141	Protein processing in endoplasmic reticulum	5
ppo03083	Polycomb repressive complex	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo03250	Viral life cycle - HIV-1	2
ppo03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	4
gma00562	Inositol phosphate metabolism	2
gma00564	Glycerophospholipid metabolism	2
gma04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04136	Autophagy - other	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2
mtr04016	MAPK signaling pathway - plant	2
mtr04070	Phosphatidylinositol signaling system	2
mtr04075	Plant hormone signal transduction	2
mtr04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	2
ath04141	Protein processing in endoplasmic reticulum	2
ath03010	Ribosome	2
ath04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	4
ath04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	5
ath03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	3
bra04145	Phagosome	3
bra04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	5
vvi04141	Protein processing in endoplasmic reticulum	3
vvi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00230	Purine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04130	SNARE interactions in vesicular transport	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04122	Sulfur relay system	2
bna00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	5
cit00190	Oxidative phosphorylation	3
cit01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	4
sly04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	4
sly04141	Protein processing in endoplasmic reticulum	3
sly03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	5
sot03420	Nucleotide excision repair	3
sot04144	Endocytosis	3
sot04145	Phagosome	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	6
sot04141	Protein processing in endoplasmic reticulum	3
sot03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01232	Nucleotide metabolism	5
nta00240	Pyrimidine metabolism	3
nta04016	MAPK signaling pathway - plant	2
nta04075	Plant hormone signal transduction	2
nta00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	6
osa04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	2
osa03013	Nucleocytoplasmic transport	2
osa03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	8
zma03013	Nucleocytoplasmic transport	3
zma03040	Spliceosome	2
zma03083	Polycomb repressive complex	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00561	Glycerolipid metabolism	3
zma00566	Sulfoquinovose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	6
zma03013	Nucleocytoplasmic transport	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	6
tae03040	Spliceosome	4
tae00590	Arachidonic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	5
tae04144	Endocytosis	3
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	7
tae03083	Polycomb repressive complex	5
tae04141	Protein processing in endoplasmic reticulum	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	2
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	3
hvu00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04626	Plant-pathogen interaction	3
sbi04016	MAPK signaling pathway - plant	2
sbi04070	Phosphatidylinositol signaling system	2
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	3
bdi04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	7
bdi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	3
cre04120	Ubiquitin mediated proteolysis	3

Expression

Expression pattern

Entrez Gene ID^*

18101521

7485297

7462681

100499899

100801453

100816570

11411155

25483759

818179

824422

838935

103835674

103840784

103829278

100264453

100248369

100244148

121228300

107909929

107920950

106411865

106367823

106440990

102626070

102577979

101266505

101251046

101253818

102588901

102580207

102581905

107793006

107815220

107831808

4333892

4337456

4346652

103654688

100282170

100382057

123110464

123102276

123114767

123447456

123395753

123395492

8064657

8081633

8076495

100837317

100820845

5726489

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	2	3	3	3	3	3	2	3	3	3	3	3	3	3	3	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18101521 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18101521 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**