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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g086887v5   uncharacterized protein 
 ath-u.5   AT1G10390   Nucleoporin autopeptidase 
 ath-u.5   AT1G59660   Nucleoporin autopeptidase 
 gma-u.5   100789177   nuclear pore complex protein NUP98A 
 gma-u.5   100786534   nuclear pore complex protein NUP98A 
 gma-u.5   102668982   nuclear pore complex protein NUP98A 
 sly-u.5   101245750   nuclear pore complex protein NUP98A 
 osa-u.5   4351598   nuclear pore complex protein NUP98A 
 osa-u.5   4351597   nuclear pore complex protein NUP98A 
 zma-u.5   101202711   Nuclear pore complex protein NUP98A 
 zma-u.5   100279429   uncharacterized LOC100279429 
 vvi-u.5   100249633   nuclear pore complex protein NUP98A 
 ppo-u.5   18096000   nuclear pore complex protein NUP98A 
 ppo-u.5   7455018   nuclear pore complex protein NUP98A 
 mtr-u.5   25484578   nuclear pore complex protein NUP98A 
 mtr-u.5   120577436   nuclear pore complex protein NUP98A 

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Top 50 coexpressed genes to CHLRE_02g086887v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g086887v5 (cre-r.1 coexpression data)

CoexMap"5727409"


creCHLRE_02g086887v5 | Entrez gene ID : 5727409    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 3 1 2 2 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000973 [list] [network] post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery  (3 genes)  IEA  
GO:0006606 [list] [network] protein import into nucleus  (40 genes)  IEA  
GO:0006405 [list] [network] RNA export from nucleus  (47 genes)  IEA  
GO CC
GO:0044614 [list] [network] nuclear pore cytoplasmic filaments  (2 genes)  IEA  
GO:0005643 [list] [network] nuclear pore  (40 genes)  IEA  
GO MF
GO:0017056 [list] [network] structural constituent of nuclear pore  (26 genes)  IEA  
Protein XP_001701744.2 [sequence] [blastp]
XP_042926984.1 [sequence] [blastp]
XP_042926985.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 2,  nucl 1  (predict for XP_001701744.2)
chlo 4,  nucl 3,  cyto 3,  cyto_nucl 3  (predict for XP_042926984.1)
cyto 8,  chlo 1,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_042926985.1)
Subcellular
localization
TargetP
other 4,  mito 3  (predict for XP_001701744.2)
other 4,  mito 3  (predict for XP_042926984.1)
other 7  (predict for XP_042926985.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g086887v5

.
ath-u.5
for
AT1G10390

.
ath-u.5
for
AT1G59660

.
gma-u.5
for
100789177

.
gma-u.5
for
100786534

.
gma-u.5
for
102668982

.
sly-u.5
for
101245750

.
osa-u.5
for
4351598

.
osa-u.5
for
4351597

.
zma-u.5
for
101202711

.
zma-u.5
for
100279429

.
vvi-u.5
for
100249633

.
ppo-u.5
for
18096000

.
ppo-u.5
for
7455018

.
mtr-u.5
for
25484578

.
mtr-u.5
for
120577436

.


Ortholog ID: 3633
Species ath ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot cit cit bdi bdi nta nta
Symbol AT1G59660 AT1G10390 LOC100786534 LOC102668982 LOC101245750 LOC4351597 LOC4351598 LOC101202711 LOC100279429 LOC103871810 LOC103838591 LOC100249633 LOC7455018 LOC18096000 LOC25484578 LOC120577436 LOC123091721 LOC123069550 LOC123448128 LOC123443381 LOC107937282 LOC107904534 LOC106362415 LOC106453101 CHLRE_02g086887v5 LOC110429746 LOC8073687 LOC102592631 LOC102616555 LOC102620159 LOC100833671 LOC100821753 LOC107823658 LOC107767733
Function* Nucleoporin autopeptidase Nucleoporin autopeptidase nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A Nuclear pore complex protein NUP98A uncharacterized LOC100279429 nuclear pore complex protein NUP98A nuclear pore complex protein NUP98B nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A-like nuclear pore complex protein NUP98A-like nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A-like uncharacterized protein nuclear pore complex protein NUP98A-like nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A-like nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A-like nuclear pore complex protein NUP98A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 6
ath03008 Ribosome biogenesis in eukaryotes 4
ath03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03015 mRNA surveillance pathway 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03008 Ribosome biogenesis in eukaryotes 2
osa03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra02010 ABC transporters 2
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 5
bra03008 Ribosome biogenesis in eukaryotes 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
mtr04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae00010 Glycolysis / Gluconeogenesis 3
tae00620 Pyruvate metabolism 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 6
ghi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna04016 MAPK signaling pathway - plant 2
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna04016 MAPK signaling pathway - plant 2
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 2
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03013 Nucleocytoplasmic transport 2
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842256 837579 100786534 102668982 101245750 4351597 4351598 101202711 100279429 103871810 103838591 100249633 7455018 18096000 25484578 120577436 123091721 123069550 123448128 123443381 107937282 107904534 106362415 106453101 5727409 110429746 8073687 102592631 102616555 102620159 100833671 100821753 107823658 107767733
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