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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g088050v5   uncharacterized protein 
 ath-u.5   GAF1   Polymerase/histidinol phosphatase-like protein 
 gma-u.5   121172931   ubiquitin C-terminal hydrolase 13-like 
 gma-u.5   100776746   protein GAMETOPHYTE DEFECTIVE 1 
 sly-u.5   101253090   uncharacterized LOC101253090 
 osa-u.5   4351650   protein GAMETOPHYTE DEFECTIVE 1 
 osa-u.5   9271052   uncharacterized LOC9271052 
 osa-u.5   4349529   uncharacterized LOC4349529 
 zma-u.5   100279258   uncharacterized LOC100279258 
 vvi-u.5   100241609   protein GAMETOPHYTE DEFECTIVE 1 
 ppo-u.5   7488147   uncharacterized LOC7488147 
 mtr-u.5   11408905   uncharacterized LOC11408905 

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Top 50 coexpressed genes to CHLRE_02g088050v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g088050v5 (cre-r.1 coexpression data)

CoexMap"5727432"


creCHLRE_02g088050v5 | Entrez gene ID : 5727432    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 3 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03008 [list] [network] Ribosome biogenesis in eukaryotes (47 genes)
GO BP
GO:0008033 [list] [network] tRNA processing  (105 genes)  IEA  
GO CC
GO:0005655 [list] [network] nucleolar ribonuclease P complex  (2 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042927002.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 3,  cyto_plas 3  (predict for XP_042927002.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042927002.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g088050v5

.
ath-u.5
for
GAF1

.
gma-u.5
for
121172931

.
gma-u.5
for
100776746

.
sly-u.5
for
101253090

.
osa-u.5
for
4351650

.
osa-u.5
for
9271052

.
osa-u.5
for
4349529

.
zma-u.5
for
100279258

.
vvi-u.5
for
100241609

.
ppo-u.5
for
7488147

.
mtr-u.5
for
11408905

.


Ortholog ID: 7003
Species ath gma sly osa osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol GAF1 LOC100776746 LOC101253090 LOC9271052 LOC4349529 LOC100279258 LOC103851531 LOC103845416 LOC100241609 LOC7488147 LOC11408905 LOC123091729 LOC123096712 LOC123448121 LOC107959072 LOC107906177 BNAC09G35310D LOC106385719 CHLRE_02g088050v5 LOC8079950 LOC8072894 LOC102585350 LOC102614383 LOC100830772 LOC107765292 LOC107814819
Function* Polymerase/histidinol phosphatase-like protein protein GAMETOPHYTE DEFECTIVE 1 uncharacterized LOC101253090 uncharacterized LOC9271052 uncharacterized LOC4349529 uncharacterized LOC100279258 protein GAMETOPHYTE DEFECTIVE 1 protein GAMETOPHYTE DEFECTIVE 1 protein GAMETOPHYTE DEFECTIVE 1 uncharacterized LOC7488147 uncharacterized LOC11408905 uncharacterized LOC123091729 uncharacterized LOC123096712 uncharacterized LOC123448121 protein GAMETOPHYTE DEFECTIVE 1 protein GAMETOPHYTE DEFECTIVE 1 protein GAMETOPHYTE DEFECTIVE 1 protein GAMETOPHYTE DEFECTIVE 1-like uncharacterized protein uncharacterized LOC8079950 uncharacterized LOC8072894 uncharacterized LOC102585350 protein GAMETOPHYTE DEFECTIVE 1 uncharacterized LOC100830772 uncharacterized LOC107765292 uncharacterized LOC107814819
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03250 Viral life cycle - HIV-1 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 7
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 2
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 4
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 8
ghi03013 Nucleocytoplasmic transport 6
ghi03250 Viral life cycle - HIV-1 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
ghi03013 Nucleocytoplasmic transport 3
ghi03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 8
nta03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836120 100776746 101253090 9271052 4349529 100279258 103851531 103845416 100241609 7488147 11408905 123091729 123096712 123448121 107959072 107906177 106416691 106385719 5727432 8079950 8072894 102585350 102614383 100830772 107765292 107814819
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