ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	121172931	ubiquitin C-terminal hydrolase 13-like
gma-r.7	121172931	ubiquitin C-terminal hydrolase 13-like
gma-u.5	100776746	protein GAMETOPHYTE DEFECTIVE 1
mtr-u.5	11408905	uncharacterized LOC11408905
ppo-u.5	7488147	uncharacterized LOC7488147
ath-u.5	GAF1	Polymerase/histidinol phosphatase-like protein
bra-r.6	103845416	protein GAMETOPHYTE DEFECTIVE 1
bra-r.6	103851531	protein GAMETOPHYTE DEFECTIVE 1
vvi-u.5	100241609	protein GAMETOPHYTE DEFECTIVE 1
ghi-r.1	107906177	protein GAMETOPHYTE DEFECTIVE 1
ghi-r.1	107959072	protein GAMETOPHYTE DEFECTIVE 1
bna-r.1	106347480	protein GAMETOPHYTE DEFECTIVE 1-like
bna-r.1	106385719	protein GAMETOPHYTE DEFECTIVE 1-like
bna-r.1	BNAC09G35310D	protein GAMETOPHYTE DEFECTIVE 1
cit-r.1	102614383	protein GAMETOPHYTE DEFECTIVE 1
sly-u.5	101253090	uncharacterized LOC101253090
sot-r.1	102585350	uncharacterized LOC102585350
nta-r.1	107814819	uncharacterized LOC107814819
nta-r.1	107765292	uncharacterized LOC107765292
osa-u.5	9271052	uncharacterized LOC9271052
osa-u.5	4351650	protein GAMETOPHYTE DEFECTIVE 1
osa-u.5	4349529	uncharacterized LOC4349529
zma-u.5	100279258	uncharacterized LOC100279258
tae-r.2	123086297	uncharacterized LOC123086297
tae-r.2	123091729	uncharacterized LOC123091729
tae-r.2	123096712	uncharacterized LOC123096712
hvu-r.1	123448121	uncharacterized LOC123448121
sbi-r.1	8072894	uncharacterized LOC8072894
sbi-r.1	8079950	uncharacterized LOC8079950
bdi-r.1	100830772	uncharacterized LOC100830772
cre-r.1	CHLRE_02g088050v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0016579 [list] [network] protein deubiquitination	(128 genes)	IEA
GO:0008033 [list] [network] tRNA processing	(161 genes)	IEA

GO CC

GO:0005655 [list] [network] nucleolar ribonuclease P complex

(8 genes)

IEA

GO MF

GO:0004843 [list] [network] cysteine-type deubiquitinase activity	(98 genes)	IEA
GO:0003723 [list] [network] RNA binding	(2019 genes)	IEA

Protein

XP_040862039.1 [sequence] [blastp]
XP_040862040.1 [sequence] [blastp]
XP_040862041.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, nucl 4	(predict for XP_040862039.1)
nucl 3, mito 2, cyto_nucl 2, chlo 2, cyto 2	(predict for XP_040862040.1)
nucl 4, nucl_plas 4, cyto 2, plas 1, mito 1, extr 1	(predict for XP_040862041.1)

Subcellular
localization
TargetP

other 9	(predict for XP_040862039.1)
other 7	(predict for XP_040862040.1)
other 9	(predict for XP_040862041.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 121172931	gma-r.7 for 121172931	gma-u.5 for 100776746	mtr-u.5 for 11408905	ppo-u.5 for 7488147	ath-u.5 for GAF1	bra-r.6 for 103845416	bra-r.6 for 103851531	vvi-u.5 for 100241609	ghi-r.1 for 107906177	ghi-r.1 for 107959072	bna-r.1 for 106347480	bna-r.1 for 106385719	bna-r.1 for BNAC09G35310D	cit-r.1 for 102614383	sly-u.5 for 101253090	sot-r.1 for 102585350	nta-r.1 for 107814819	nta-r.1 for 107765292	osa-u.5 for 9271052	osa-u.5 for 4351650	osa-u.5 for 4349529	zma-u.5 for 100279258	tae-r.2 for 123086297	tae-r.2 for 123091729	tae-r.2 for 123096712	hvu-r.1 for 123448121	sbi-r.1 for 8072894	sbi-r.1 for 8079950	bdi-r.1 for 100830772	cre-r.1 for CHLRE_02g088050v5

Ortholog

Ortholog ID: 7003

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

GAF1

Function^*

ubiquitin C-terminal hydrolase 13-like