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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106385719   protein GAMETOPHYTE DEFECTIVE 1-like 
 ath-u.5   GAF1   Polymerase/histidinol phosphatase-like protein 
 gma-u.5   121172931   ubiquitin C-terminal hydrolase 13-like 
 gma-u.5   100776746   protein GAMETOPHYTE DEFECTIVE 1 
 vvi-u.5   100241609   protein GAMETOPHYTE DEFECTIVE 1 
 ppo-u.5   7488147   uncharacterized LOC7488147 
 mtr-u.5   11408905   uncharacterized LOC11408905 
 sly-u.5   101253090   uncharacterized LOC101253090 
 osa-u.5   9271052   uncharacterized LOC9271052 
 osa-u.5   4349529   uncharacterized LOC4349529 
 osa-u.5   4351650   protein GAMETOPHYTE DEFECTIVE 1 
 zma-u.5   100279258   uncharacterized LOC100279258 

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Top 50 coexpressed genes to 106385719 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106385719 (bna-r.1 coexpression data)

CoexMap"106385719"


bnaLOC106385719 | Entrez gene ID : 106385719    
Species bna ath gma vvi ppo mtr sly osa zma hvu cit bra ghi sbi bdi nta tae cre sot
Paralog 1 1 2 1 1 1 1 3 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03008 [list] [network] Ribosome biogenesis in eukaryotes (6477 genes)
GO BP
GO:0008033 [list] [network] tRNA processing  (280 genes)  IEA  
GO CC
GO:0005655 [list] [network] nucleolar ribonuclease P complex  (6 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_013681073.2 [sequence] [blastp]
XP_013681079.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  cyto 3  (predict for XP_013681073.2)
nucl 5,  cyto 3,  chlo 2  (predict for XP_013681079.2)
Subcellular
localization
TargetP
other 9  (predict for XP_013681073.2)
other 9  (predict for XP_013681079.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106385719
ath-u.5
for
GAF1
gma-u.5
for
121172931
gma-u.5
for
100776746
vvi-u.5
for
100241609
ppo-u.5
for
7488147
mtr-u.5
for
11408905
sly-u.5
for
101253090
osa-u.5
for
9271052
osa-u.5
for
4349529
osa-u.5
for
4351650
zma-u.5
for
100279258


Ortholog ID: 7003
Species bna bna bra bra ath ghi ghi cit gma vvi ppo mtr sly sot nta nta osa osa zma tae tae hvu sbi sbi bdi cre
Symbol BNAC09G35310D LOC106385719 LOC103851531 LOC103845416 GAF1 LOC107959072 LOC107906177 LOC102614383 LOC100776746 LOC100241609 LOC7488147 LOC11408905 LOC101253090 LOC102585350 LOC107765292 LOC107814819 LOC9271052 LOC4349529 LOC100279258 LOC123091729 LOC123096712 LOC123448121 LOC8079950 LOC8072894 LOC100830772 CHLRE_02g088050v5
Function* protein GAMETOPHYTE DEFECTIVE 1 protein GAMETOPHYTE DEFECTIVE 1-like protein GAMETOPHYTE DEFECTIVE 1 protein GAMETOPHYTE DEFECTIVE 1 Polymerase/histidinol phosphatase-like protein protein GAMETOPHYTE DEFECTIVE 1 protein GAMETOPHYTE DEFECTIVE 1 protein GAMETOPHYTE DEFECTIVE 1 protein GAMETOPHYTE DEFECTIVE 1 protein GAMETOPHYTE DEFECTIVE 1 uncharacterized LOC7488147 uncharacterized LOC11408905 uncharacterized LOC101253090 uncharacterized LOC102585350 uncharacterized LOC107765292 uncharacterized LOC107814819 uncharacterized LOC9271052 uncharacterized LOC4349529 uncharacterized LOC100279258 uncharacterized LOC123091729 uncharacterized LOC123096712 uncharacterized LOC123448121 uncharacterized LOC8079950 uncharacterized LOC8072894 uncharacterized LOC100830772 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 2
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 8
ghi03013 Nucleocytoplasmic transport 6
ghi03250 Viral life cycle - HIV-1 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
ghi03013 Nucleocytoplasmic transport 3
ghi03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03250 Viral life cycle - HIV-1 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 7
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 8
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 4
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106416691 106385719 103851531 103845416 836120 107959072 107906177 102614383 100776746 100241609 7488147 11408905 101253090 102585350 107765292 107814819 9271052 4349529 100279258 123091729 123096712 123448121 8079950 8072894 100830772 5727432
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