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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g428750v5   uncharacterized protein 
 ath-u.5   AT3G11964   RIBOSOMAL RNA PROCESSING 5 
 gma-u.5   100793149   rRNA biogenesis protein RRP5 
 gma-u.5   100797745   rRNA biogenesis protein RRP5 
 sly-u.5   101261692   rRNA biogenesis protein RRP5 
 osa-u.5   4342673   rRNA biogenesis protein RRP5 
 zma-u.5   103632100   rRNA biogenesis protein RRP5 
 zma-u.5   103632096   rRNA biogenesis protein RRP5 
 vvi-u.5   100262322   rRNA biogenesis protein RRP5 
 ppo-u.5   7488047   rRNA biogenesis protein RRP5 
 mtr-u.5   25483593   rRNA biogenesis protein RRP5 

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Top 50 coexpressed genes to CHLRE_10g428750v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g428750v5 (cre-r.1 coexpression data)

CoexMap"5728131"


creCHLRE_10g428750v5 | Entrez gene ID : 5728131    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006364 [list] [network] rRNA processing  (218 genes)  IEA  
GO CC
GO:0032040 [list] [network] small-subunit processome  (35 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042920001.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto_nucl 4,  nucl 3,  cyto 3,  chlo 1,  plas 1  (predict for XP_042920001.1)
Subcellular
localization
TargetP
mito 6,  other 5  (predict for XP_042920001.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g428750v5

.
ath-u.5
for
AT3G11964

.
gma-u.5
for
100793149

.
gma-u.5
for
100797745

.
sly-u.5
for
101261692

.
osa-u.5
for
4342673

.
zma-u.5
for
103632100

.
zma-u.5
for
103632096

.
vvi-u.5
for
100262322

.
ppo-u.5
for
7488047

.
mtr-u.5
for
25483593

.


Ortholog ID: 6870
Species ath gma gma sly osa zma zma bra bra vvi ppo mtr tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT3G11964 LOC100797745 LOC100793149 LOC101261692 LOC4342673 LOC103632096 LOC103632100 LOC103870291 LOC103845866 LOC100262322 LOC7488047 LOC25483593 LOC123189286 LOC123410099 LOC107891228 LOC107889476 LOC106351390 LOC106452513 CHLRE_10g428750v5 LOC8063685 LOC102584281 LOC102625636 LOC100825699 LOC107768241 LOC107783659
Function* RIBOSOMAL RNA PROCESSING 5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5 uncharacterized protein rRNA biogenesis protein RRP5 rRNA biogenesis protein rrp5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5 rRNA biogenesis protein RRP5
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 8
ath03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 9
gma03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
osa03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
vvi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 8
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 7
hvu03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 6
ghi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 6
ghi00040 Pentose and glucuronate interconversions 2
ghi00052 Galactose metabolism 2
ghi00500 Starch and sucrose metabolism 2
ghi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 6
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 6
bdi03020 RNA polymerase 2
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820370 100797745 100793149 101261692 4342673 103632096 103632100 103870291 103845866 100262322 7488047 25483593 123189286 123410099 107891228 107889476 106351390 106452513 5728131 8063685 102584281 102625636 100825699 107768241 107783659
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