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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g424850v5   uncharacterized protein 
 ath-u.5   emb1220   pre-mRNA processing ribonucleoprotein binding region-containing protein 
 gma-u.5   100818919   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 gma-u.5   100792415   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 sly-u.5   101261054   U4/U6 small nuclear ribonucleoprotein Prp31 
 osa-u.5   4336619   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 osa-u.5   4342372   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 zma-u.5   100194058   pre-mRNA processing ribonucleoprotein binding region-containing protein 
 vvi-u.5   100262218   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 ppo-u.5   7492800   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 ppo-u.5   7457417   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 mtr-u.5   11440004   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 

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Top 50 coexpressed genes to CHLRE_10g424850v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g424850v5 (cre-r.1 coexpression data)

CoexMap"5728202"


creCHLRE_10g424850v5 | Entrez gene ID : 5728202      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03040 [list] [network] Spliceosome (105 genes)
GO BP
GO:0000244 [list] [network] spliceosomal tri-snRNP complex assembly  (4 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (103 genes)  IEA  
GO CC
GO:0005687 [list] [network] U4 snRNP  (6 genes)  IEA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (18 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (26 genes)  IEA  
GO MF
Protein XP_001702570.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 3,  cysk 1,  cyto_pero 1,  cyto_E.R. 1  (predict for XP_001702570.1)
Subcellular
localization
TargetP
other 7  (predict for XP_001702570.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g424850v5

.
ath-u.5
for
emb1220

.
gma-u.5
for
100818919

.
gma-u.5
for
100792415

.
sly-u.5
for
101261054

.
osa-u.5
for
4336619

.
osa-u.5
for
4342372

.
zma-u.5
for
100194058

.
vvi-u.5
for
100262218

.
ppo-u.5
for
7492800

.
ppo-u.5
for
7457417

.
mtr-u.5
for
11440004

.


Ortholog ID: 8286
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol emb1220 LOC100792415 LOC100818919 LOC101261054 LOC4342372 LOC100194058 LOC103829722 LOC100262218 LOC7457417 LOC7492800 LOC11440004 LOC123066691 LOC123182944 LOC123449340 LOC107909635 LOC121203024 LOC111215693 LOC106390149 CHLRE_10g424850v5 LOC8055974 LOC102587736 LOC102607561 LOC100828224 LOC107829166 LOC107812036
Function* pre-mRNA processing ribonucleoprotein binding region-containing protein U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 U4/U6 small nuclear ribonucleoprotein Prp31 homolog pre-mRNA processing ribonucleoprotein binding region-containing protein U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog uncharacterized protein U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 11
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 10
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 3
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma03015 mRNA surveillance pathway 2
zma03060 Protein export 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03013 Nucleocytoplasmic transport 3
bra03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 4
ppo03083 Polycomb repressive complex 2
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 9
tae03040 Spliceosome 3
tae04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 8
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 8
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
cre04144 Endocytosis 2
cre03020 RNA polymerase 2
cre03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
bdi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03050 Proteasome 5
nta03008 Ribosome biogenesis in eukaryotes 2
nta03083 Polycomb repressive complex 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03050 Proteasome 5
nta03008 Ribosome biogenesis in eukaryotes 2
nta03083 Polycomb repressive complex 2
nta04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842312 100792415 100818919 101261054 4342372 100194058 103829722 100262218 7457417 7492800 11440004 123066691 123182944 123449340 107909635 121203024 111215693 106390149 5728202 8055974 102587736 102607561 100828224 107829166 107812036
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