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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   emb1220   pre-mRNA processing ribonucleoprotein binding region-containing protein 
 ath-r.7   emb1220   pre-mRNA processing ribonucleoprotein binding region-containing protein 
 ath-e.2   emb1220   pre-mRNA processing ribonucleoprotein binding region-containing protein 
 bra-r.6   103829722   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 bna-r.1   106390149   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 bna-r.1   106450067   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 bna-r.1   111215693   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 ghi-r.1   107909635   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 ghi-r.1   121203024   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 cit-r.1   102607561   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 gma-u.5   100818919   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 gma-u.5   100792415   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 vvi-u.5   100262218   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 ppo-u.5   7492800   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 ppo-u.5   7457417   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 mtr-u.5   11440004   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 sly-u.5   101261054   U4/U6 small nuclear ribonucleoprotein Prp31 
 sot-r.1   102587736   U4/U6 small nuclear ribonucleoprotein Prp31 
 nta-r.1   107829166   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 nta-r.1   107812036   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 osa-u.5   4336619   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 osa-u.5   4342372   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 zma-u.5   100194058   pre-mRNA processing ribonucleoprotein binding region-containing protein 
 tae-r.2   123144048   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 tae-r.2   123066691   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 tae-r.2   123182944   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 hvu-r.1   123449340   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 sbi-r.1   8055974   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 bdi-r.1   100828224   U4/U6 small nuclear ribonucleoprotein Prp31 homolog 
 cre-r.1   CHLRE_10g424850v5   uncharacterized protein 

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Top 50 coexpressed genes to emb1220 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to emb1220 (ath-u.5 coexpression data)

CoexMap"842312"


athemb1220 | Entrez gene ID : 842312      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 3 2 1 2 1 2 1 1 1 2 2 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO:0070417 [list] [network] cellular response to cold  (38 genes)  IMP  
GO:0006346 [list] [network] DNA methylation-dependent constitutive heterochromatin formation  (53 genes)  IMP  
GO:0009845 [list] [network] seed germination  (111 genes)  IMP  
GO:0008380 [list] [network] RNA splicing  (195 genes)  IMP  
GO:0009409 [list] [network] response to cold  (436 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  NAS  
GO CC
GO:0015030 [list] [network] Cajal body  (12 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_564754.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  nucl 2,  plas 2,  cysk_nucl 1,  cyto 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for NP_564754.1)
Subcellular
localization
TargetP
other 7  (predict for NP_564754.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
emb1220
ath-r.7
for
emb1220
ath-e.2
for
emb1220
bra-r.6
for
103829722
bna-r.1
for
106390149
bna-r.1
for
106450067
bna-r.1
for
111215693
ghi-r.1
for
107909635
ghi-r.1
for
121203024
cit-r.1
for
102607561
gma-u.5
for
100818919
gma-u.5
for
100792415
vvi-u.5
for
100262218
ppo-u.5
for
7492800
ppo-u.5
for
7457417
mtr-u.5
for
11440004
sly-u.5
for
101261054
sot-r.1
for
102587736
nta-r.1
for
107829166
nta-r.1
for
107812036
osa-u.5
for
4336619
osa-u.5
for
4342372
zma-u.5
for
100194058
tae-r.2
for
123144048
tae-r.2
for
123066691
tae-r.2
for
123182944
hvu-r.1
for
123449340
sbi-r.1
for
8055974
bdi-r.1
for
100828224
cre-r.1
for
CHLRE_10g424850v5


Ortholog ID: 8286
Species ath bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma tae tae tae hvu sbi bdi cre
Symbol emb1220 LOC103829722 LOC106390149 LOC106450067 LOC111215693 LOC107909635 LOC121203024 LOC102607561 LOC100818919 LOC100792415 LOC100262218 LOC7492800 LOC7457417 LOC11440004 LOC101261054 LOC102587736 LOC107829166 LOC107812036 LOC4336619 LOC4342372 LOC100194058 LOC123144048 LOC123066691 LOC123182944 LOC123449340 LOC8055974 LOC100828224 CHLRE_10g424850v5
Function* pre-mRNA processing ribonucleoprotein binding region-containing protein U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 U4/U6 small nuclear ribonucleoprotein Prp31 U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog pre-mRNA processing ribonucleoprotein binding region-containing protein U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog U4/U6 small nuclear ribonucleoprotein Prp31 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03013 Nucleocytoplasmic transport 3
bra03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 8
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 8
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 8
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 10
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 11
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 4
ppo03083 Polycomb repressive complex 2
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 3
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03050 Proteasome 5
nta03008 Ribosome biogenesis in eukaryotes 2
nta03083 Polycomb repressive complex 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03050 Proteasome 5
nta03008 Ribosome biogenesis in eukaryotes 2
nta03083 Polycomb repressive complex 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
osa03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma03015 mRNA surveillance pathway 2
zma03060 Protein export 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 9
tae03040 Spliceosome 3
tae04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
bdi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
cre04144 Endocytosis 2
cre03020 RNA polymerase 2
cre03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842312 103829722 106390149 106450067 111215693 107909635 121203024 102607561 100818919 100792415 100262218 7492800 7457417 11440004 101261054 102587736 107829166 107812036 4336619 4342372 100194058 123144048 123066691 123182944 123449340 8055974 100828224 5728202
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