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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g417950v5   uncharacterized protein 
 ath-u.5   AT2G40360   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100818497   ribosome biogenesis protein BOP1 homolog 
 gma-u.5   100803648   ribosome biogenesis protein BOP1 homolog 
 sly-u.5   101245591   ribosome biogenesis protein BOP1 homolog 
 osa-u.5   4343071   ribosome biogenesis protein BOP1 homolog 
 zma-u.5   100382622   ribosome biogenesis protein BOP1 homolog 
 vvi-u.5   100251720   ribosome biogenesis protein BOP1 homolog 
 ppo-u.5   18111184   ribosome biogenesis protein BOP1 homolog 
 ppo-u.5   18098304   ribosome biogenesis protein BOP1 homolog 
 mtr-u.5   11429211   ribosome biogenesis protein BOP1 homolog 

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Top 50 coexpressed genes to CHLRE_10g417950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g417950v5 (cre-r.1 coexpression data)

CoexMap"5728337"


creCHLRE_10g417950v5 | Entrez gene ID : 5728337      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000463 [list] [network] maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (11 genes)  IEA  
GO:0042254 [list] [network] ribosome biogenesis  (274 genes)  IEA  
GO CC
GO:0070545 [list] [network] PeBoW complex  (2 genes)  IEA  
GO:0030687 [list] [network] preribosome, large subunit precursor  (23 genes)  IEA  
GO MF
GO:0043021 [list] [network] ribonucleoprotein complex binding  (50 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042919810.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  chlo_mito 4,  mito 3,  nucl 2  (predict for XP_042919810.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042919810.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g417950v5

.
ath-u.5
for
AT2G40360

.
gma-u.5
for
100818497

.
gma-u.5
for
100803648

.
sly-u.5
for
101245591

.
osa-u.5
for
4343071

.
zma-u.5
for
100382622

.
vvi-u.5
for
100251720

.
ppo-u.5
for
18111184

.
ppo-u.5
for
18098304

.
mtr-u.5
for
11429211

.


Ortholog ID: 7543
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol AT2G40360 LOC100803648 LOC100818497 LOC101245591 LOC4343071 LOC100382622 LOC103858155 LOC100251720 LOC18098304 LOC18111184 LOC11429211 LOC123104805 LOC123113088 LOC123451972 LOC107930755 LOC107931324 LOC106450762 LOC106438235 CHLRE_10g417950v5 LOC8086330 LOC102596556 LOC102611280 LOC100839231 LOC100822652 LOC107781437 LOC107792259
Function* Transducin/WD40 repeat-like superfamily protein ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog uncharacterized protein ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog ribosome biogenesis protein BOP1 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
hvu03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03008 Ribosome biogenesis in eukaryotes 3
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03010 Ribosome 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818629 100803648 100818497 101245591 4343071 100382622 103858155 100251720 18098304 18111184 11429211 123104805 123113088 123451972 107930755 107931324 106450762 106438235 5728337 8086330 102596556 102611280 100839231 100822652 107781437 107792259
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